Hb_147090_010

Information

Type -
Description -
Location Contig147090: 853-5377
Sequence    

Annotation

kegg
ID mdm:103417794
description tetraketide alpha-pyrone reductase 1-like
nr
ID XP_008354172.1
description PREDICTED: tetraketide alpha-pyrone reductase 1-like [Malus domestica]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVL9
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964770 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147090_010 0.0 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Malus domestica]
2 Hb_008062_040 0.1907172747 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
3 Hb_032202_180 0.196529099 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
4 Hb_002299_030 0.1992203527 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001085_050 0.2003462448 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
6 Hb_000326_050 0.209746879 - - Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
7 Hb_000959_030 0.2128059295 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_000094_330 0.2133077567 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
9 Hb_002876_240 0.2136045975 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
10 Hb_002603_080 0.2147100208 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
11 Hb_003922_010 0.2166518309 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
12 Hb_000575_030 0.2184724238 - - unnamed protein product [Vitis vinifera]
13 Hb_007885_060 0.2213112136 - - replication factor C 40 kDa family protein [Populus trichocarpa]
14 Hb_029695_110 0.2253047936 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
15 Hb_008686_080 0.2253772445 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
16 Hb_001956_040 0.2259985358 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_012725_070 0.2263381338 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
18 Hb_146673_010 0.2271744253 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
19 Hb_002820_110 0.2278220689 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
20 Hb_001105_190 0.2284009792 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_147090_010 Hb_147090_010 Hb_008062_040 Hb_008062_040 Hb_147090_010--Hb_008062_040 Hb_032202_180 Hb_032202_180 Hb_147090_010--Hb_032202_180 Hb_002299_030 Hb_002299_030 Hb_147090_010--Hb_002299_030 Hb_001085_050 Hb_001085_050 Hb_147090_010--Hb_001085_050 Hb_000326_050 Hb_000326_050 Hb_147090_010--Hb_000326_050 Hb_000959_030 Hb_000959_030 Hb_147090_010--Hb_000959_030 Hb_008062_040--Hb_001085_050 Hb_000575_030 Hb_000575_030 Hb_008062_040--Hb_000575_030 Hb_000072_070 Hb_000072_070 Hb_008062_040--Hb_000072_070 Hb_000317_490 Hb_000317_490 Hb_008062_040--Hb_000317_490 Hb_011316_100 Hb_011316_100 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250 Hb_029695_110 Hb_029695_110 Hb_032202_180--Hb_029695_110 Hb_001022_030 Hb_001022_030 Hb_032202_180--Hb_001022_030 Hb_001205_300 Hb_001205_300 Hb_032202_180--Hb_001205_300 Hb_032202_180--Hb_000959_030 Hb_003752_070 Hb_003752_070 Hb_032202_180--Hb_003752_070 Hb_003728_100 Hb_003728_100 Hb_032202_180--Hb_003728_100 Hb_007885_060 Hb_007885_060 Hb_002299_030--Hb_007885_060 Hb_003638_130 Hb_003638_130 Hb_002299_030--Hb_003638_130 Hb_002686_170 Hb_002686_170 Hb_002299_030--Hb_002686_170 Hb_002524_010 Hb_002524_010 Hb_002299_030--Hb_002524_010 Hb_002311_180 Hb_002311_180 Hb_002299_030--Hb_002311_180 Hb_000181_090 Hb_000181_090 Hb_002299_030--Hb_000181_090 Hb_001085_050--Hb_000072_070 Hb_000003_600 Hb_000003_600 Hb_001085_050--Hb_000003_600 Hb_007313_090 Hb_007313_090 Hb_001085_050--Hb_007313_090 Hb_001085_050--Hb_000575_030 Hb_001085_050--Hb_003638_130 Hb_000094_330 Hb_000094_330 Hb_000326_050--Hb_000094_330 Hb_004897_020 Hb_004897_020 Hb_000326_050--Hb_004897_020 Hb_000567_030 Hb_000567_030 Hb_000326_050--Hb_000567_030 Hb_000054_100 Hb_000054_100 Hb_000326_050--Hb_000054_100 Hb_004297_070 Hb_004297_070 Hb_000326_050--Hb_004297_070 Hb_002876_240 Hb_002876_240 Hb_000326_050--Hb_002876_240 Hb_011021_020 Hb_011021_020 Hb_000959_030--Hb_011021_020 Hb_001922_170 Hb_001922_170 Hb_000959_030--Hb_001922_170 Hb_000959_030--Hb_029695_110 Hb_005405_020 Hb_005405_020 Hb_000959_030--Hb_005405_020 Hb_000959_030--Hb_001205_300 Hb_009225_020 Hb_009225_020 Hb_000959_030--Hb_009225_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57044 1.4536 13.3921 1.45508 2.31025 9.85025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5905 4.2836 4.03976 2.0859 4.61057

CAGE analysis