Hb_147218_010

Information

Type -
Description -
Location Contig147218: 147-539
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147218_010 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_001304_130 0.1037799251 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
3 Hb_086336_010 0.1044035128 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_011032_010 0.1369335167 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_000875_070 0.1522094273 - - -
6 Hb_121992_010 0.1610967244 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
7 Hb_001486_060 0.1618216146 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
8 Hb_053575_020 0.1625521692 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
9 Hb_005217_040 0.1638455863 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
10 Hb_169051_010 0.165839952 - - JHL06B08.1 [Jatropha curcas]
11 Hb_065500_010 0.1693203108 - - -
12 Hb_000818_080 0.1711705982 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
13 Hb_003125_180 0.1720710593 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
14 Hb_003058_200 0.1750931797 - - PREDICTED: dihydropyrimidinase [Populus euphratica]
15 Hb_168180_010 0.1761671348 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000019_170 0.1762672537 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
17 Hb_039074_010 0.1766642452 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_053125_010 0.1798241485 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
19 Hb_003371_190 0.1799061667 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
20 Hb_146510_010 0.1813741209 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_147218_010 Hb_147218_010 Hb_001304_130 Hb_001304_130 Hb_147218_010--Hb_001304_130 Hb_086336_010 Hb_086336_010 Hb_147218_010--Hb_086336_010 Hb_011032_010 Hb_011032_010 Hb_147218_010--Hb_011032_010 Hb_000875_070 Hb_000875_070 Hb_147218_010--Hb_000875_070 Hb_121992_010 Hb_121992_010 Hb_147218_010--Hb_121992_010 Hb_001486_060 Hb_001486_060 Hb_147218_010--Hb_001486_060 Hb_001304_130--Hb_121992_010 Hb_001304_130--Hb_000875_070 Hb_001304_130--Hb_086336_010 Hb_003216_070 Hb_003216_070 Hb_001304_130--Hb_003216_070 Hb_001304_130--Hb_001486_060 Hb_086336_010--Hb_001486_060 Hb_003371_190 Hb_003371_190 Hb_086336_010--Hb_003371_190 Hb_000818_080 Hb_000818_080 Hb_086336_010--Hb_000818_080 Hb_005288_210 Hb_005288_210 Hb_086336_010--Hb_005288_210 Hb_003125_180 Hb_003125_180 Hb_011032_010--Hb_003125_180 Hb_053575_020 Hb_053575_020 Hb_011032_010--Hb_053575_020 Hb_169051_010 Hb_169051_010 Hb_011032_010--Hb_169051_010 Hb_003058_200 Hb_003058_200 Hb_011032_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_011032_010--Hb_000674_010 Hb_002851_010 Hb_002851_010 Hb_011032_010--Hb_002851_010 Hb_002518_180 Hb_002518_180 Hb_000875_070--Hb_002518_180 Hb_000019_010 Hb_000019_010 Hb_000875_070--Hb_000019_010 Hb_044380_020 Hb_044380_020 Hb_000875_070--Hb_044380_020 Hb_005217_040 Hb_005217_040 Hb_000875_070--Hb_005217_040 Hb_136880_010 Hb_136880_010 Hb_121992_010--Hb_136880_010 Hb_012788_010 Hb_012788_010 Hb_121992_010--Hb_012788_010 Hb_121992_010--Hb_086336_010 Hb_001485_010 Hb_001485_010 Hb_121992_010--Hb_001485_010 Hb_001486_060--Hb_000818_080 Hb_000793_040 Hb_000793_040 Hb_001486_060--Hb_000793_040 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.661775 3.73266 0.721819 5.12805 0.938179 1.37419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.412398 0 1.03112 7.03442 4.81008

CAGE analysis