Hb_147355_030

Information

Type -
Description -
Location Contig147355: 6619-10009
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00510g
description hypothetical protein
nr
ID XP_011007856.1
description PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
swissprot
ID Q9FKZ0
description Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1
trembl
ID U5FRI6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s00510g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147355_030 0.0 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
2 Hb_113803_010 0.1270745369 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002267_120 0.1652926591 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
4 Hb_006971_080 0.1745091774 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_005392_100 0.1884747897 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
6 Hb_008226_110 0.195084004 - - uncharacterized protein LOC100501343 [Zea mays]
7 Hb_012355_010 0.2008978507 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
8 Hb_176232_040 0.2010989158 - - conserved hypothetical protein [Ricinus communis]
9 Hb_156683_010 0.2019330867 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
10 Hb_000028_540 0.2021401255 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
11 Hb_002231_140 0.2023848626 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
12 Hb_003407_020 0.2025127024 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
13 Hb_001862_020 0.2031036448 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
14 Hb_146361_020 0.2053816094 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
15 Hb_186115_010 0.205717724 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_006142_010 0.2060470215 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
17 Hb_001863_050 0.2075057269 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
18 Hb_002903_030 0.2081883923 - - polyphenol oxidase [Cydonia oblonga]
19 Hb_000115_180 0.2083717203 - - hypothetical protein RCOM_1308310 [Ricinus communis]
20 Hb_003938_220 0.2165579196 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_147355_030 Hb_147355_030 Hb_113803_010 Hb_113803_010 Hb_147355_030--Hb_113803_010 Hb_002267_120 Hb_002267_120 Hb_147355_030--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_147355_030--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_147355_030--Hb_005392_100 Hb_008226_110 Hb_008226_110 Hb_147355_030--Hb_008226_110 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_005656_110 Hb_005656_110 Hb_113803_010--Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_113803_010--Hb_000248_090 Hb_003938_220 Hb_003938_220 Hb_113803_010--Hb_003938_220 Hb_002903_030 Hb_002903_030 Hb_113803_010--Hb_002903_030 Hb_004607_010 Hb_004607_010 Hb_113803_010--Hb_004607_010 Hb_002267_120--Hb_006971_080 Hb_002267_120--Hb_008226_110 Hb_002267_120--Hb_005392_100 Hb_082960_020 Hb_082960_020 Hb_002267_120--Hb_082960_020 Hb_003455_010 Hb_003455_010 Hb_002267_120--Hb_003455_010 Hb_006971_080--Hb_008226_110 Hb_006971_080--Hb_005392_100 Hb_006971_080--Hb_082960_020 Hb_002942_180 Hb_002942_180 Hb_006971_080--Hb_002942_180 Hb_005392_100--Hb_008226_110 Hb_005392_100--Hb_002942_180 Hb_131652_010 Hb_131652_010 Hb_005392_100--Hb_131652_010 Hb_008226_110--Hb_002942_180 Hb_008226_110--Hb_131652_010 Hb_176232_040 Hb_176232_040 Hb_012355_010--Hb_176232_040 Hb_156683_010 Hb_156683_010 Hb_012355_010--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_012355_010--Hb_000028_540 Hb_002231_140 Hb_002231_140 Hb_012355_010--Hb_002231_140 Hb_003407_020 Hb_003407_020 Hb_012355_010--Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_012355_010--Hb_001862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.245706 0 0.0706478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.584891 0

CAGE analysis