Hb_147378_010

Information

Type -
Description -
Location Contig147378: 2138-3878
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12014: 2178-3864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147378_010 0.0 - - -
2 Hb_000390_210 0.0906291318 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_000749_260 0.0948884972 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
4 Hb_001544_050 0.1010173149 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
5 Hb_004650_050 0.1125934725 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
6 Hb_008053_030 0.1129547294 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
7 Hb_000465_410 0.1157987891 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009838_070 0.1177427711 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
9 Hb_143004_020 0.1183625865 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
10 Hb_002272_220 0.1213359951 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001180_010 0.1228234325 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
12 Hb_006153_150 0.1254800094 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
13 Hb_006816_250 0.1268904752 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
14 Hb_002701_070 0.1296365995 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
15 Hb_003680_060 0.1341463658 - - hypothetical protein VITISV_022322 [Vitis vinifera]
16 Hb_000711_030 0.1373690606 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
17 Hb_089966_010 0.1421718045 - - -
18 Hb_000243_060 0.1430252403 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
19 Hb_000322_030 0.1460880635 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
20 Hb_000329_500 0.1480401447 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_147378_010 Hb_147378_010 Hb_000390_210 Hb_000390_210 Hb_147378_010--Hb_000390_210 Hb_000749_260 Hb_000749_260 Hb_147378_010--Hb_000749_260 Hb_001544_050 Hb_001544_050 Hb_147378_010--Hb_001544_050 Hb_004650_050 Hb_004650_050 Hb_147378_010--Hb_004650_050 Hb_008053_030 Hb_008053_030 Hb_147378_010--Hb_008053_030 Hb_000465_410 Hb_000465_410 Hb_147378_010--Hb_000465_410 Hb_000390_210--Hb_001544_050 Hb_000390_210--Hb_000749_260 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_000749_260--Hb_001544_050 Hb_000749_260--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_001544_050--Hb_000465_410 Hb_001544_050--Hb_002701_070 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_009838_070 Hb_009838_070 Hb_004650_050--Hb_009838_070 Hb_000711_030 Hb_000711_030 Hb_004650_050--Hb_000711_030 Hb_091433_050 Hb_091433_050 Hb_004650_050--Hb_091433_050 Hb_003680_060 Hb_003680_060 Hb_004650_050--Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_004650_050--Hb_009393_130 Hb_004096_210 Hb_004096_210 Hb_004650_050--Hb_004096_210 Hb_008053_030--Hb_000465_410 Hb_008053_030--Hb_001544_050 Hb_001377_120 Hb_001377_120 Hb_008053_030--Hb_001377_120 Hb_006133_020 Hb_006133_020 Hb_008053_030--Hb_006133_020 Hb_001268_160 Hb_001268_160 Hb_008053_030--Hb_001268_160 Hb_000465_410--Hb_002701_070 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000465_410--Hb_004994_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44026 3.59161 38.3097 26.975 0.176933 0.861021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3706 4.46081 1.64802 2.25436 31.6065

CAGE analysis