Hb_147737_010

Information

Type -
Description -
Location Contig147737: 9407-18937
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03830g
description POPTRDRAFT_652599; hypothetical protein
nr
ID XP_012082554.1
description PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16638 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12072: 9542-19001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147737_010 0.0 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
2 Hb_000329_130 0.0489102324 - - beta-tubulin cofactor d, putative [Ricinus communis]
3 Hb_015026_050 0.050210254 - - XPA-binding protein, putative [Ricinus communis]
4 Hb_000343_210 0.0541586241 - - ran-binding protein, putative [Ricinus communis]
5 Hb_000567_010 0.0597046448 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
6 Hb_003124_130 0.0602987753 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
7 Hb_000531_090 0.0625941229 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
8 Hb_140049_020 0.0636725225 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
9 Hb_000417_160 0.0645326985 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
10 Hb_000813_100 0.0652627453 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
11 Hb_000475_020 0.0668307412 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
12 Hb_007885_070 0.0669267206 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
13 Hb_010315_090 0.0673031688 - - suppressor of ty, putative [Ricinus communis]
14 Hb_000035_040 0.0680125486 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
15 Hb_002221_050 0.0685044136 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
16 Hb_000331_190 0.0694860707 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
17 Hb_001946_300 0.0701454245 - - PREDICTED: F-box protein At-B [Jatropha curcas]
18 Hb_025477_060 0.0702632413 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
19 Hb_000320_380 0.0711427698 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
20 Hb_000313_340 0.071258281 - - DNA repair protein xp-E, putative [Ricinus communis]

Gene co-expression network

sample Hb_147737_010 Hb_147737_010 Hb_000329_130 Hb_000329_130 Hb_147737_010--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_147737_010--Hb_015026_050 Hb_000343_210 Hb_000343_210 Hb_147737_010--Hb_000343_210 Hb_000567_010 Hb_000567_010 Hb_147737_010--Hb_000567_010 Hb_003124_130 Hb_003124_130 Hb_147737_010--Hb_003124_130 Hb_000531_090 Hb_000531_090 Hb_147737_010--Hb_000531_090 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_000320_380 Hb_000320_380 Hb_015026_050--Hb_000320_380 Hb_002221_050 Hb_002221_050 Hb_015026_050--Hb_002221_050 Hb_015026_050--Hb_000329_130 Hb_007885_070 Hb_007885_070 Hb_015026_050--Hb_007885_070 Hb_003847_120 Hb_003847_120 Hb_015026_050--Hb_003847_120 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_005494_020 Hb_005494_020 Hb_000567_010--Hb_005494_020 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000567_010--Hb_000331_190 Hb_000796_190 Hb_000796_190 Hb_003124_130--Hb_000796_190 Hb_001454_320 Hb_001454_320 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_000160_290 Hb_000160_290 Hb_003124_130--Hb_000160_290 Hb_125092_020 Hb_125092_020 Hb_000531_090--Hb_125092_020 Hb_002893_150 Hb_002893_150 Hb_000531_090--Hb_002893_150 Hb_000789_080 Hb_000789_080 Hb_000531_090--Hb_000789_080 Hb_000531_090--Hb_000035_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.2132 54.2291 26.0425 23.368 71.2747 85.3307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1856 18.2807 29.5525 32.2136 24.812

CAGE analysis