Hb_147793_010

Information

Type -
Description -
Location Contig147793: 2290-3528
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02140g
description POPTRDRAFT_558224; hypothetical protein
nr
ID XP_012077907.1
description PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
swissprot
ID Q9SF15
description E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1
trembl
ID A0A067KML0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13635 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase pub24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147793_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
2 Hb_000002_200 0.0880713141 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
3 Hb_001627_030 0.1023674891 - - hypothetical protein JCGZ_11752 [Jatropha curcas]
4 Hb_034661_020 0.1072055429 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
5 Hb_000111_020 0.1110756323 - - hypothetical protein SORBIDRAFT_04g003755 [Sorghum bicolor]
6 Hb_096292_010 0.1187789937 - - hypothetical protein JCGZ_25718 [Jatropha curcas]
7 Hb_185736_010 0.1478557273 - - -
8 Hb_007273_010 0.1564847144 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
9 Hb_187134_010 0.1627128609 - - -
10 Hb_041405_010 0.1764904973 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Glycine max]
11 Hb_002391_330 0.2010438736 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000002_170 0.2022246893 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
13 Hb_006277_070 0.2026907343 - - conserved hypothetical protein [Ricinus communis]
14 Hb_051067_010 0.2039247016 - - -
15 Hb_000164_060 0.2043749842 - - -
16 Hb_023661_060 0.2097537228 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
17 Hb_003732_040 0.219014712 - - putative esterase family protein [Populus trichocarpa]
18 Hb_000016_070 0.2306971839 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
19 Hb_000019_020 0.2306971839 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
20 Hb_000019_160 0.2306971839 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_147793_010 Hb_147793_010 Hb_000002_200 Hb_000002_200 Hb_147793_010--Hb_000002_200 Hb_001627_030 Hb_001627_030 Hb_147793_010--Hb_001627_030 Hb_034661_020 Hb_034661_020 Hb_147793_010--Hb_034661_020 Hb_000111_020 Hb_000111_020 Hb_147793_010--Hb_000111_020 Hb_096292_010 Hb_096292_010 Hb_147793_010--Hb_096292_010 Hb_185736_010 Hb_185736_010 Hb_147793_010--Hb_185736_010 Hb_000002_200--Hb_034661_020 Hb_000002_200--Hb_001627_030 Hb_000002_200--Hb_000111_020 Hb_000002_200--Hb_096292_010 Hb_000002_200--Hb_185736_010 Hb_001627_030--Hb_000111_020 Hb_001627_030--Hb_185736_010 Hb_007273_010 Hb_007273_010 Hb_001627_030--Hb_007273_010 Hb_001627_030--Hb_096292_010 Hb_001627_030--Hb_034661_020 Hb_034661_020--Hb_000111_020 Hb_034661_020--Hb_096292_010 Hb_034661_020--Hb_185736_010 Hb_000111_020--Hb_185736_010 Hb_000111_020--Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_000111_020--Hb_187134_010 Hb_000111_020--Hb_096292_010 Hb_096292_010--Hb_185736_010 Hb_096292_010--Hb_007273_010 Hb_096292_010--Hb_187134_010 Hb_185736_010--Hb_007273_010 Hb_185736_010--Hb_187134_010 Hb_011016_040 Hb_011016_040 Hb_185736_010--Hb_011016_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.012762 0.053938 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 8.75506 0.0572383 0.811717 0.063687

CAGE analysis