Hb_147873_010

Information

Type -
Description -
Location Contig147873: 3058-6180
Sequence    

Annotation

kegg
ID sot:102595311
description uncharacterized LOC102595311
nr
ID XP_006365576.1
description PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID J3SDF5
description Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147873_010 0.0 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
2 Hb_136660_010 0.1049162385 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_126103_010 0.1464654775 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_060909_010 0.1547912705 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
5 Hb_002078_090 0.1587074942 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002475_130 0.1615845299 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
7 Hb_000233_100 0.1679558306 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_001921_010 0.1743139481 - - ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_001863_450 0.1745217492 - - cryptochrome 1.2 [Populus tremula]
10 Hb_001242_190 0.1747808382 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
11 Hb_000544_020 0.1763138665 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
12 Hb_002739_070 0.1767141967 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
13 Hb_036568_010 0.1771178723 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
14 Hb_002687_150 0.1803924452 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_008253_040 0.1816241436 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
16 Hb_005155_010 0.1880335022 - - amino acid transporter, putative [Ricinus communis]
17 Hb_006040_070 0.1888590133 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
18 Hb_001662_170 0.1890528575 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
19 Hb_004030_070 0.1907665232 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
20 Hb_001408_150 0.1914663163 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_147873_010 Hb_147873_010 Hb_136660_010 Hb_136660_010 Hb_147873_010--Hb_136660_010 Hb_126103_010 Hb_126103_010 Hb_147873_010--Hb_126103_010 Hb_060909_010 Hb_060909_010 Hb_147873_010--Hb_060909_010 Hb_002078_090 Hb_002078_090 Hb_147873_010--Hb_002078_090 Hb_002475_130 Hb_002475_130 Hb_147873_010--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_147873_010--Hb_000233_100 Hb_136660_010--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_136660_010--Hb_001408_150 Hb_136660_010--Hb_126103_010 Hb_001921_010 Hb_001921_010 Hb_136660_010--Hb_001921_010 Hb_012018_010 Hb_012018_010 Hb_136660_010--Hb_012018_010 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_126103_010--Hb_002078_090 Hb_001863_450 Hb_001863_450 Hb_126103_010--Hb_001863_450 Hb_060909_010--Hb_001408_150 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_010261_030 Hb_010261_030 Hb_002078_090--Hb_010261_030 Hb_062229_010 Hb_062229_010 Hb_002078_090--Hb_062229_010 Hb_006718_040 Hb_006718_040 Hb_002078_090--Hb_006718_040 Hb_000032_020 Hb_000032_020 Hb_002078_090--Hb_000032_020 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_007259_020 Hb_007259_020 Hb_002475_130--Hb_007259_020 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_002475_130--Hb_000532_130 Hb_002475_130--Hb_000233_100 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0924122 1.32667 0.205383 0.241587 0.0711321 0.110941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0120284 0.13794 0.319738 0.461523

CAGE analysis