Hb_148079_010

Information

Type -
Description -
Location Contig148079: 547-1576
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35260g
description POPTRDRAFT_706765; hypothetical protein
nr
ID XP_012072367.1
description PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
swissprot
ID Q5ZMV7
description WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1
trembl
ID B9GI53
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s35260g PE=4 SV=2
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 82

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12094: 528-1228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148079_010 0.0 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
2 Hb_019053_020 0.0926178258 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
3 Hb_103760_010 0.1059044009 - - serine/arginine rich splicing factor, putative [Ricinus communis]
4 Hb_005147_060 0.1178069565 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
5 Hb_007026_040 0.1238218287 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
6 Hb_126295_010 0.131562426 - - PREDICTED: protein SEH1 [Jatropha curcas]
7 Hb_004732_020 0.1360613132 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
8 Hb_002067_120 0.1394688968 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
9 Hb_012023_020 0.1418030697 - - hypothetical protein JCGZ_03076 [Jatropha curcas]
10 Hb_000270_220 0.14246784 - - hypothetical protein EUTSA_v100213350mg, partial [Eutrema salsugineum]
11 Hb_115107_010 0.1424838396 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
12 Hb_001488_410 0.1429582835 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
13 Hb_002375_040 0.143591052 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
14 Hb_000035_200 0.1439154124 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
15 Hb_001840_070 0.1441212219 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001541_090 0.1446912593 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_005211_100 0.1450188121 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
18 Hb_005170_040 0.1482103887 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
19 Hb_000696_010 0.1482944538 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
20 Hb_041392_010 0.1483747387 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]

Gene co-expression network

sample Hb_148079_010 Hb_148079_010 Hb_019053_020 Hb_019053_020 Hb_148079_010--Hb_019053_020 Hb_103760_010 Hb_103760_010 Hb_148079_010--Hb_103760_010 Hb_005147_060 Hb_005147_060 Hb_148079_010--Hb_005147_060 Hb_007026_040 Hb_007026_040 Hb_148079_010--Hb_007026_040 Hb_126295_010 Hb_126295_010 Hb_148079_010--Hb_126295_010 Hb_004732_020 Hb_004732_020 Hb_148079_010--Hb_004732_020 Hb_001541_090 Hb_001541_090 Hb_019053_020--Hb_001541_090 Hb_012023_020 Hb_012023_020 Hb_019053_020--Hb_012023_020 Hb_019053_020--Hb_103760_010 Hb_019053_020--Hb_126295_010 Hb_001488_410 Hb_001488_410 Hb_019053_020--Hb_001488_410 Hb_000083_160 Hb_000083_160 Hb_103760_010--Hb_000083_160 Hb_103760_010--Hb_001488_410 Hb_103760_010--Hb_007026_040 Hb_003010_020 Hb_003010_020 Hb_103760_010--Hb_003010_020 Hb_000208_210 Hb_000208_210 Hb_103760_010--Hb_000208_210 Hb_001617_060 Hb_001617_060 Hb_103760_010--Hb_001617_060 Hb_005147_060--Hb_004732_020 Hb_008103_040 Hb_008103_040 Hb_005147_060--Hb_008103_040 Hb_005211_100 Hb_005211_100 Hb_005147_060--Hb_005211_100 Hb_004659_020 Hb_004659_020 Hb_005147_060--Hb_004659_020 Hb_058643_010 Hb_058643_010 Hb_005147_060--Hb_058643_010 Hb_001691_120 Hb_001691_120 Hb_005147_060--Hb_001691_120 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_000236_310 Hb_000236_310 Hb_007026_040--Hb_000236_310 Hb_002600_140 Hb_002600_140 Hb_007026_040--Hb_002600_140 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_000718_080 Hb_000718_080 Hb_007026_040--Hb_000718_080 Hb_126295_010--Hb_012023_020 Hb_002067_120 Hb_002067_120 Hb_126295_010--Hb_002067_120 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_126295_010--Hb_001541_090 Hb_000025_050 Hb_000025_050 Hb_126295_010--Hb_000025_050 Hb_004732_020--Hb_005211_100 Hb_003777_310 Hb_003777_310 Hb_004732_020--Hb_003777_310 Hb_023001_060 Hb_023001_060 Hb_004732_020--Hb_023001_060 Hb_004732_020--Hb_001691_120 Hb_007192_080 Hb_007192_080 Hb_004732_020--Hb_007192_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.88567 5.87094 10.0046 19.0134 15.1617 32.7664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.13342 7.894 10.7889 18.4308 3.19332

CAGE analysis