Hb_148121_010

Information

Type -
Description -
Location Contig148121: 6402-8911
Sequence    

Annotation

kegg
ID rcu:RCOM_0778060
description hypothetical protein
nr
ID XP_002521910.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7E1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0778060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12129: 7940-8570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148121_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000742_270 0.0960910647 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
3 Hb_001741_090 0.1044232932 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
4 Hb_001507_070 0.1097352397 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001035_040 0.1174413363 - - unnamed protein product [Coffea canephora]
6 Hb_001268_080 0.1181019649 - - catalytic, putative [Ricinus communis]
7 Hb_000032_040 0.1207963564 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
8 Hb_003020_310 0.1245836508 - - glycosyltransferase, putative [Ricinus communis]
9 Hb_000907_090 0.1247700394 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_078633_010 0.1266867369 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
11 Hb_000920_150 0.1292202234 - - annexin [Manihot esculenta]
12 Hb_001213_120 0.1321466015 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
13 Hb_000175_610 0.1342513922 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
14 Hb_011004_010 0.1349792396 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
15 Hb_003371_100 0.1350487147 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_006831_030 0.1371383307 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
17 Hb_149683_010 0.1371516803 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
18 Hb_000260_580 0.1401437041 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001584_300 0.1433504206 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
20 Hb_004077_030 0.143548191 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]

Gene co-expression network

sample Hb_148121_010 Hb_148121_010 Hb_000742_270 Hb_000742_270 Hb_148121_010--Hb_000742_270 Hb_001741_090 Hb_001741_090 Hb_148121_010--Hb_001741_090 Hb_001507_070 Hb_001507_070 Hb_148121_010--Hb_001507_070 Hb_001035_040 Hb_001035_040 Hb_148121_010--Hb_001035_040 Hb_001268_080 Hb_001268_080 Hb_148121_010--Hb_001268_080 Hb_000032_040 Hb_000032_040 Hb_148121_010--Hb_000032_040 Hb_000742_270--Hb_001507_070 Hb_000742_270--Hb_000032_040 Hb_011004_010 Hb_011004_010 Hb_000742_270--Hb_011004_010 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_001741_090--Hb_001035_040 Hb_000107_070 Hb_000107_070 Hb_001741_090--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_149683_010 Hb_149683_010 Hb_001741_090--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_001741_090--Hb_002000_110 Hb_001507_070--Hb_011004_010 Hb_003371_100 Hb_003371_100 Hb_001507_070--Hb_003371_100 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_001507_070--Hb_000032_040 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_000367_280 Hb_000367_280 Hb_001268_080--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_001268_080--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_001268_080--Hb_078633_010 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030 Hb_004297_040 Hb_004297_040 Hb_001268_080--Hb_004297_040 Hb_000032_040--Hb_011004_010 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37226 1.00085 0.529934 4.88596 3.93231 5.97976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2946 20.8126 21.5268 1.29907 0.545517

CAGE analysis