Hb_148121_030

Information

Type -
Description -
Location Contig148121: 41817-42263
Sequence    

Annotation

kegg
ID tcc:TCM_011217
description Homeobox protein 32, putative
nr
ID XP_012467182.1
description PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061EA71
description Homeobox protein 32, putative OS=Theobroma cacao GN=TCM_011217 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148121_030 0.0 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
2 Hb_040963_010 0.0972925964 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
3 Hb_120268_010 0.1325379223 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
4 Hb_001388_020 0.1350241902 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
5 Hb_005618_110 0.1360882103 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_000203_060 0.137925428 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
7 Hb_002740_170 0.1573613915 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
8 Hb_000254_150 0.1604434062 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
9 Hb_032299_070 0.1722567704 - - -
10 Hb_001427_220 0.1745683661 - - hypothetical protein CISIN_1g033375mg [Citrus sinensis]
11 Hb_004021_120 0.1772817342 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_124385_010 0.178556934 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
13 Hb_000149_120 0.1807022973 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
14 Hb_136546_010 0.1820436442 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
15 Hb_001675_130 0.1865817304 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
16 Hb_006120_020 0.189990166 - - -
17 Hb_004162_040 0.1913806468 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
18 Hb_010813_030 0.1933007284 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
19 Hb_001769_030 0.1979071657 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_003878_100 0.1985589602 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_148121_030 Hb_148121_030 Hb_040963_010 Hb_040963_010 Hb_148121_030--Hb_040963_010 Hb_120268_010 Hb_120268_010 Hb_148121_030--Hb_120268_010 Hb_001388_020 Hb_001388_020 Hb_148121_030--Hb_001388_020 Hb_005618_110 Hb_005618_110 Hb_148121_030--Hb_005618_110 Hb_000203_060 Hb_000203_060 Hb_148121_030--Hb_000203_060 Hb_002740_170 Hb_002740_170 Hb_148121_030--Hb_002740_170 Hb_000149_120 Hb_000149_120 Hb_040963_010--Hb_000149_120 Hb_040963_010--Hb_005618_110 Hb_040963_010--Hb_001388_020 Hb_002928_220 Hb_002928_220 Hb_040963_010--Hb_002928_220 Hb_040963_010--Hb_002740_170 Hb_120268_010--Hb_000203_060 Hb_004162_040 Hb_004162_040 Hb_120268_010--Hb_004162_040 Hb_001709_070 Hb_001709_070 Hb_120268_010--Hb_001709_070 Hb_001769_030 Hb_001769_030 Hb_120268_010--Hb_001769_030 Hb_124385_010 Hb_124385_010 Hb_120268_010--Hb_124385_010 Hb_001427_220 Hb_001427_220 Hb_001388_020--Hb_001427_220 Hb_013786_010 Hb_013786_010 Hb_001388_020--Hb_013786_010 Hb_136546_010 Hb_136546_010 Hb_001388_020--Hb_136546_010 Hb_107809_010 Hb_107809_010 Hb_001388_020--Hb_107809_010 Hb_000254_150 Hb_000254_150 Hb_005618_110--Hb_000254_150 Hb_005618_110--Hb_000149_120 Hb_032299_070 Hb_032299_070 Hb_005618_110--Hb_032299_070 Hb_005618_110--Hb_002740_170 Hb_000203_060--Hb_004162_040 Hb_000203_060--Hb_001709_070 Hb_001623_470 Hb_001623_470 Hb_000203_060--Hb_001623_470 Hb_000203_060--Hb_001769_030 Hb_003878_100 Hb_003878_100 Hb_002740_170--Hb_003878_100 Hb_002740_170--Hb_000254_150 Hb_001675_130 Hb_001675_130 Hb_002740_170--Hb_001675_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.383492 0.114777 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.483292 0.23197

CAGE analysis