Hb_148121_040

Information

Type transcription factor
Description TF Family: BBR-BPC
Location Contig148121: 44532-45371
Sequence    

Annotation

kegg
ID rcu:RCOM_0778050
description hypothetical protein
nr
ID XP_012072387.1
description PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SKD0
description Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thaliana GN=BPC1 PE=1 SV=1
trembl
ID A0A067KPQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04824 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12130: 43522-45768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148121_040 0.0 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
2 Hb_000608_050 0.0711856533 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
3 Hb_000638_250 0.0742628086 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_004696_080 0.0742814302 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
5 Hb_152784_010 0.0747208434 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
6 Hb_005054_210 0.0771823654 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
7 Hb_000403_060 0.0807859458 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
8 Hb_005765_050 0.0817444855 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
9 Hb_000805_240 0.0820394865 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
10 Hb_026889_030 0.0829267349 - - protein with unknown function [Ricinus communis]
11 Hb_007044_120 0.0847349296 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
12 Hb_002681_200 0.0854870863 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
13 Hb_000336_240 0.0868582607 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
14 Hb_009486_020 0.0880549186 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
15 Hb_000317_390 0.0898149248 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
16 Hb_021068_040 0.0901595938 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
17 Hb_001013_030 0.0906286866 - - GTP-binding protein yptv3, putative [Ricinus communis]
18 Hb_003362_030 0.0906357186 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
19 Hb_000103_320 0.0907685302 - - Stem-specific protein TSJT1, putative [Ricinus communis]
20 Hb_001300_150 0.0910079876 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_148121_040 Hb_148121_040 Hb_000608_050 Hb_000608_050 Hb_148121_040--Hb_000608_050 Hb_000638_250 Hb_000638_250 Hb_148121_040--Hb_000638_250 Hb_004696_080 Hb_004696_080 Hb_148121_040--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_000403_060 Hb_000403_060 Hb_148121_040--Hb_000403_060 Hb_005765_050 Hb_005765_050 Hb_000608_050--Hb_005765_050 Hb_000220_100 Hb_000220_100 Hb_000608_050--Hb_000220_100 Hb_000086_140 Hb_000086_140 Hb_000608_050--Hb_000086_140 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_004078_040 Hb_004078_040 Hb_000608_050--Hb_004078_040 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_000638_250--Hb_004696_080 Hb_024439_010 Hb_024439_010 Hb_004696_080--Hb_024439_010 Hb_004696_080--Hb_152784_010 Hb_004696_080--Hb_000805_240 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_152784_010--Hb_000103_320 Hb_003622_040 Hb_003622_040 Hb_005054_210--Hb_003622_040 Hb_000174_210 Hb_000174_210 Hb_005054_210--Hb_000174_210 Hb_005054_210--Hb_005765_050 Hb_076233_040 Hb_076233_040 Hb_005054_210--Hb_076233_040 Hb_000045_310 Hb_000045_310 Hb_005054_210--Hb_000045_310 Hb_000175_340 Hb_000175_340 Hb_000403_060--Hb_000175_340 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000403_060--Hb_000638_250 Hb_000403_060--Hb_007044_120 Hb_055062_020 Hb_055062_020 Hb_000403_060--Hb_055062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0401 10.8179 27.5457 36.11 14.1891 17.0652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.5424 40.0119 43.6685 16.712 12.6465

CAGE analysis