Hb_148121_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig148121: 84256-87041
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11160g
description hypothetical protein
nr
ID XP_011024808.1
description PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
swissprot
ID F4IPE3
description Protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana GN=SGR5 PE=1 SV=1
trembl
ID A0A067KTA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04826 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein shoot gravitropism 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12133: 84595-86926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148121_080 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
2 Hb_000317_330 0.1529385312 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
3 Hb_010560_060 0.1650296685 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
4 Hb_000157_200 0.1716242791 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
5 Hb_005288_200 0.1726018305 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_003203_020 0.1753806963 - - unknown [Lotus japonicus]
7 Hb_000028_160 0.1777083668 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
8 Hb_155702_010 0.1814638066 - - Tetraspanin-5 [Gossypium arboreum]
9 Hb_001049_090 0.1830825557 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
10 Hb_007803_060 0.1869166621 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
11 Hb_000815_140 0.1874782461 - - cytochrome P450, putative [Ricinus communis]
12 Hb_002163_030 0.1886642948 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
13 Hb_001769_010 0.1888718852 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002615_040 0.1889800726 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
15 Hb_001500_050 0.1919014799 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
16 Hb_010128_090 0.1931424453 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
17 Hb_011030_010 0.1933966425 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
18 Hb_000202_040 0.1945130573 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
19 Hb_003531_060 0.1964308097 - - unnamed protein product [Coffea canephora]
20 Hb_005725_080 0.1964789751 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]

Gene co-expression network

sample Hb_148121_080 Hb_148121_080 Hb_000317_330 Hb_000317_330 Hb_148121_080--Hb_000317_330 Hb_010560_060 Hb_010560_060 Hb_148121_080--Hb_010560_060 Hb_000157_200 Hb_000157_200 Hb_148121_080--Hb_000157_200 Hb_005288_200 Hb_005288_200 Hb_148121_080--Hb_005288_200 Hb_003203_020 Hb_003203_020 Hb_148121_080--Hb_003203_020 Hb_000028_160 Hb_000028_160 Hb_148121_080--Hb_000028_160 Hb_000373_270 Hb_000373_270 Hb_000317_330--Hb_000373_270 Hb_001341_030 Hb_001341_030 Hb_000317_330--Hb_001341_030 Hb_000920_040 Hb_000920_040 Hb_000317_330--Hb_000920_040 Hb_000078_180 Hb_000078_180 Hb_000317_330--Hb_000078_180 Hb_004218_150 Hb_004218_150 Hb_000317_330--Hb_004218_150 Hb_000032_620 Hb_000032_620 Hb_000317_330--Hb_000032_620 Hb_000098_020 Hb_000098_020 Hb_010560_060--Hb_000098_020 Hb_116349_160 Hb_116349_160 Hb_010560_060--Hb_116349_160 Hb_028358_010 Hb_028358_010 Hb_010560_060--Hb_028358_010 Hb_007803_060 Hb_007803_060 Hb_010560_060--Hb_007803_060 Hb_002111_060 Hb_002111_060 Hb_010560_060--Hb_002111_060 Hb_000563_600 Hb_000563_600 Hb_010560_060--Hb_000563_600 Hb_000157_200--Hb_003203_020 Hb_003430_060 Hb_003430_060 Hb_000157_200--Hb_003430_060 Hb_000336_270 Hb_000336_270 Hb_000157_200--Hb_000336_270 Hb_010697_040 Hb_010697_040 Hb_000157_200--Hb_010697_040 Hb_002081_120 Hb_002081_120 Hb_000157_200--Hb_002081_120 Hb_000046_070 Hb_000046_070 Hb_000157_200--Hb_000046_070 Hb_155396_010 Hb_155396_010 Hb_005288_200--Hb_155396_010 Hb_155702_010 Hb_155702_010 Hb_005288_200--Hb_155702_010 Hb_005288_200--Hb_003203_020 Hb_000525_010 Hb_000525_010 Hb_005288_200--Hb_000525_010 Hb_000011_190 Hb_000011_190 Hb_005288_200--Hb_000011_190 Hb_005288_200--Hb_000032_620 Hb_000453_100 Hb_000453_100 Hb_003203_020--Hb_000453_100 Hb_003203_020--Hb_000011_190 Hb_000086_580 Hb_000086_580 Hb_003203_020--Hb_000086_580 Hb_003203_020--Hb_155396_010 Hb_000815_140 Hb_000815_140 Hb_000028_160--Hb_000815_140 Hb_010128_070 Hb_010128_070 Hb_000028_160--Hb_010128_070 Hb_000742_210 Hb_000742_210 Hb_000028_160--Hb_000742_210 Hb_009620_030 Hb_009620_030 Hb_000028_160--Hb_009620_030 Hb_046931_010 Hb_046931_010 Hb_000028_160--Hb_046931_010 Hb_003064_030 Hb_003064_030 Hb_000028_160--Hb_003064_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.133 21.0876 4.39359 14.802 6.86755 17.8897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2157 6.30431 12.3276 8.63502 9.05523

CAGE analysis