Hb_148209_020

Information

Type -
Description -
Location Contig148209: 17794-25810
Sequence    

Annotation

kegg
ID rcu:RCOM_1674900
description Transcription regulatory protein SWI3, putative
nr
ID XP_012081763.1
description PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
swissprot
ID Q8VY05
description SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3
trembl
ID A0A067K099
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18808 PE=4 SV=1
Gene Ontology
ID GO:0003677
description chromatin remodeling complex isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12151: 17900-20655 , PASA_asmbl_12152: 18863-19064 , PASA_asmbl_12154: 24788-25023 , PASA_asmbl_12155: 20666-25860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148209_020 0.0 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
2 Hb_002849_080 0.0670609217 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
3 Hb_012395_160 0.0730532271 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
4 Hb_006316_070 0.0747756565 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_002477_150 0.0775039034 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
6 Hb_002977_010 0.0813991352 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
7 Hb_005399_020 0.0854536738 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
8 Hb_003866_020 0.085504297 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000265_250 0.0864963889 - - auxilin, putative [Ricinus communis]
10 Hb_005946_170 0.0877692859 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
11 Hb_002609_010 0.0878805337 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
12 Hb_000685_080 0.0900375603 - - protein binding protein, putative [Ricinus communis]
13 Hb_032202_240 0.0911342906 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
14 Hb_011465_030 0.0937021186 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_005038_020 0.0942672288 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_001946_300 0.0948091072 - - PREDICTED: F-box protein At-B [Jatropha curcas]
17 Hb_001247_230 0.1022789282 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_001584_170 0.1026258526 - - neutral/alkaline invertase [Manihot esculenta]
19 Hb_000363_130 0.102678937 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
20 Hb_000227_380 0.1029420879 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_148209_020 Hb_148209_020 Hb_002849_080 Hb_002849_080 Hb_148209_020--Hb_002849_080 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_006316_070 Hb_006316_070 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_002977_010 Hb_002977_010 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_002849_080--Hb_006316_070 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_012395_160--Hb_005399_020 Hb_001584_170 Hb_001584_170 Hb_012395_160--Hb_001584_170 Hb_012395_160--Hb_005038_020 Hb_012395_160--Hb_006316_070 Hb_000116_280 Hb_000116_280 Hb_012395_160--Hb_000116_280 Hb_006316_070--Hb_002977_010 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_006316_070--Hb_002477_150 Hb_006316_070--Hb_001584_170 Hb_002477_150--Hb_011465_030 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_001616_050 Hb_001616_050 Hb_002977_010--Hb_001616_050 Hb_005399_020--Hb_000116_280 Hb_005399_020--Hb_005038_020 Hb_000685_080 Hb_000685_080 Hb_005399_020--Hb_000685_080 Hb_000367_290 Hb_000367_290 Hb_005399_020--Hb_000367_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.8921 51.1415 9.73543 6.21834 47.9661 52.6194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5693 9.80373 13.9619 13.9629 6.74724

CAGE analysis