Hb_148209_110

Information

Type -
Description -
Location Contig148209: 85944-88323
Sequence    

Annotation

kegg
ID rcu:RCOM_0937520
description sugar transporter, putative (EC:1.3.1.74)
nr
ID CAP58707.1
description putative polyol transported protein 2 [Hevea brasiliensis]
swissprot
ID Q8VZ80
description Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2
trembl
ID B0RZ59
description Putative polyol transported protein 2 OS=Hevea brasiliensis GN=plt2 PE=2 SV=1
Gene Ontology
ID GO:0016021
description polyol transporter 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12161: 85867-88157
cDNA
(Sanger)
(ID:Location)		 033_J24.ab1: 87045-88157

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148209_110 0.0 - - putative polyol transported protein 2 [Hevea brasiliensis]
2 Hb_000010_470 0.0738401345 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
3 Hb_001500_040 0.101062489 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_000602_010 0.1110451637 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
5 Hb_000563_550 0.1116846507 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
6 Hb_004678_050 0.1138215636 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
7 Hb_002551_020 0.1147654397 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
8 Hb_003893_010 0.1159846412 - - hypothetical protein M569_16374 [Genlisea aurea]
9 Hb_048476_050 0.1161144554 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
10 Hb_001959_210 0.1173381561 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
11 Hb_000051_110 0.1176713048 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000061_320 0.1180420818 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
13 Hb_008066_010 0.1185911441 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
14 Hb_020419_010 0.1191197919 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
15 Hb_006400_030 0.119473055 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
16 Hb_002216_040 0.1230053262 - - PREDICTED: protein PRD1 [Jatropha curcas]
17 Hb_000483_200 0.1231512956 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_024185_020 0.1235127999 - - -
19 Hb_001329_300 0.124150444 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
20 Hb_003032_040 0.1242578946 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]

Gene co-expression network

sample Hb_148209_110 Hb_148209_110 Hb_000010_470 Hb_000010_470 Hb_148209_110--Hb_000010_470 Hb_001500_040 Hb_001500_040 Hb_148209_110--Hb_001500_040 Hb_000602_010 Hb_000602_010 Hb_148209_110--Hb_000602_010 Hb_000563_550 Hb_000563_550 Hb_148209_110--Hb_000563_550 Hb_004678_050 Hb_004678_050 Hb_148209_110--Hb_004678_050 Hb_002551_020 Hb_002551_020 Hb_148209_110--Hb_002551_020 Hb_155764_010 Hb_155764_010 Hb_000010_470--Hb_155764_010 Hb_000010_460 Hb_000010_460 Hb_000010_470--Hb_000010_460 Hb_002216_040 Hb_002216_040 Hb_000010_470--Hb_002216_040 Hb_000010_470--Hb_004678_050 Hb_006400_030 Hb_006400_030 Hb_000010_470--Hb_006400_030 Hb_006400_060 Hb_006400_060 Hb_001500_040--Hb_006400_060 Hb_001269_550 Hb_001269_550 Hb_001500_040--Hb_001269_550 Hb_001959_210 Hb_001959_210 Hb_001500_040--Hb_001959_210 Hb_002016_110 Hb_002016_110 Hb_001500_040--Hb_002016_110 Hb_000483_200 Hb_000483_200 Hb_001500_040--Hb_000483_200 Hb_006915_050 Hb_006915_050 Hb_001500_040--Hb_006915_050 Hb_000029_020 Hb_000029_020 Hb_000602_010--Hb_000029_020 Hb_002449_020 Hb_002449_020 Hb_000602_010--Hb_002449_020 Hb_000482_090 Hb_000482_090 Hb_000602_010--Hb_000482_090 Hb_002687_110 Hb_002687_110 Hb_000602_010--Hb_002687_110 Hb_001691_210 Hb_001691_210 Hb_000602_010--Hb_001691_210 Hb_000115_060 Hb_000115_060 Hb_000602_010--Hb_000115_060 Hb_005701_010 Hb_005701_010 Hb_000563_550--Hb_005701_010 Hb_005043_010 Hb_005043_010 Hb_000563_550--Hb_005043_010 Hb_002603_160 Hb_002603_160 Hb_000563_550--Hb_002603_160 Hb_000563_550--Hb_002551_020 Hb_002897_060 Hb_002897_060 Hb_000563_550--Hb_002897_060 Hb_001360_050 Hb_001360_050 Hb_004678_050--Hb_001360_050 Hb_000025_120 Hb_000025_120 Hb_004678_050--Hb_000025_120 Hb_012675_060 Hb_012675_060 Hb_004678_050--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_004678_050--Hb_000834_270 Hb_020419_010 Hb_020419_010 Hb_004678_050--Hb_020419_010 Hb_003020_230 Hb_003020_230 Hb_004678_050--Hb_003020_230 Hb_011671_220 Hb_011671_220 Hb_002551_020--Hb_011671_220 Hb_168773_010 Hb_168773_010 Hb_002551_020--Hb_168773_010 Hb_004109_190 Hb_004109_190 Hb_002551_020--Hb_004109_190 Hb_002551_020--Hb_000029_020 Hb_002496_050 Hb_002496_050 Hb_002551_020--Hb_002496_050 Hb_000061_320 Hb_000061_320 Hb_002551_020--Hb_000061_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.805 35.764 22.6071 31.4021 125.81 131.923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
235.428 144.856 243.571 167.201 76.3397

CAGE analysis