Hb_148209_120

Information

Type -
Description -
Location Contig148209: 86516-86788
Sequence    

Annotation

kegg
ID dosa:Os12t0512150-00
description Os12g0512150; Hypothetical protein.
nr
ID KDO79507.1
description hypothetical protein CISIN_1g032846mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GVM4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032846mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 033_J24r.ab1: 85901-86534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148209_120 0.0 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
2 Hb_001235_070 0.0777370962 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003020_230 0.0847226335 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
4 Hb_005398_030 0.0855346274 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
5 Hb_001691_210 0.0883401428 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
6 Hb_005997_010 0.0901816632 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
7 Hb_000120_590 0.0912031464 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
8 Hb_000061_320 0.0913049447 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
9 Hb_009954_040 0.0932471298 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
10 Hb_157022_020 0.0995043945 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
11 Hb_117134_010 0.0998551029 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
12 Hb_004116_040 0.1022848388 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
13 Hb_008554_020 0.1023735025 - - -
14 Hb_092100_020 0.1025692084 - - strictosidine synthase, putative [Ricinus communis]
15 Hb_003175_040 0.1037681761 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
16 Hb_000300_610 0.1053715157 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
17 Hb_000087_020 0.1057886706 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
18 Hb_001718_100 0.1065402072 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_005686_110 0.1073179575 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
20 Hb_004595_020 0.1077858745 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_148209_120 Hb_148209_120 Hb_001235_070 Hb_001235_070 Hb_148209_120--Hb_001235_070 Hb_003020_230 Hb_003020_230 Hb_148209_120--Hb_003020_230 Hb_005398_030 Hb_005398_030 Hb_148209_120--Hb_005398_030 Hb_001691_210 Hb_001691_210 Hb_148209_120--Hb_001691_210 Hb_005997_010 Hb_005997_010 Hb_148209_120--Hb_005997_010 Hb_000120_590 Hb_000120_590 Hb_148209_120--Hb_000120_590 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_003020_230--Hb_005997_010 Hb_009954_040 Hb_009954_040 Hb_003020_230--Hb_009954_040 Hb_003020_230--Hb_000371_080 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_001824_070 Hb_001824_070 Hb_003020_230--Hb_001824_070 Hb_000087_020 Hb_000087_020 Hb_005398_030--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_005398_030--Hb_000024_080 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_000676_290 Hb_000676_290 Hb_005398_030--Hb_000676_290 Hb_000089_160 Hb_000089_160 Hb_001691_210--Hb_000089_160 Hb_001718_100 Hb_001718_100 Hb_001691_210--Hb_001718_100 Hb_001691_210--Hb_005997_010 Hb_003175_040 Hb_003175_040 Hb_001691_210--Hb_003175_040 Hb_001691_210--Hb_003020_230 Hb_000205_270 Hb_000205_270 Hb_001691_210--Hb_000205_270 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_005997_010--Hb_009954_040 Hb_005997_010--Hb_000087_020 Hb_005997_010--Hb_001824_070 Hb_005997_010--Hb_000371_080 Hb_008511_110 Hb_008511_110 Hb_000120_590--Hb_008511_110 Hb_001754_010 Hb_001754_010 Hb_000120_590--Hb_001754_010 Hb_000120_590--Hb_005398_030 Hb_001629_100 Hb_001629_100 Hb_000120_590--Hb_001629_100 Hb_130291_010 Hb_130291_010 Hb_000120_590--Hb_130291_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
188.622 29.3907 22.4825 76.4172 137.996 265.596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
412.475 261.222 222.4 154.993 70.2291

CAGE analysis