Hb_148262_010

Information

Type -
Description -
Location Contig148262: 5358-7017
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12163: 5624-5947 , PASA_asmbl_12164: 6026-6246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148262_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_026124_020 0.0395207893 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
3 Hb_001401_120 0.0477446024 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
4 Hb_009117_020 0.0633345132 - - RALF-LIKE 32 family protein [Populus trichocarpa]
5 Hb_000012_380 0.0764804084 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
6 Hb_000245_110 0.0872727682 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
7 Hb_007579_030 0.0897886884 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_005614_020 0.0923410406 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
9 Hb_001366_300 0.0941904713 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
10 Hb_135052_010 0.0986357229 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_029665_010 0.1028408084 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_011381_050 0.104936112 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
13 Hb_115572_010 0.1051692189 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
14 Hb_042083_010 0.1100588195 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
15 Hb_003090_190 0.1107885488 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
16 Hb_029238_040 0.1123529879 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_001680_050 0.112624191 - - -
18 Hb_003747_160 0.113262785 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002499_030 0.1140800941 - - receptor-kinase, putative [Ricinus communis]
20 Hb_015807_090 0.1150880228 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_148262_010 Hb_148262_010 Hb_026124_020 Hb_026124_020 Hb_148262_010--Hb_026124_020 Hb_001401_120 Hb_001401_120 Hb_148262_010--Hb_001401_120 Hb_009117_020 Hb_009117_020 Hb_148262_010--Hb_009117_020 Hb_000012_380 Hb_000012_380 Hb_148262_010--Hb_000012_380 Hb_000245_110 Hb_000245_110 Hb_148262_010--Hb_000245_110 Hb_007579_030 Hb_007579_030 Hb_148262_010--Hb_007579_030 Hb_026124_020--Hb_000012_380 Hb_026124_020--Hb_001401_120 Hb_026124_020--Hb_000245_110 Hb_001366_300 Hb_001366_300 Hb_026124_020--Hb_001366_300 Hb_077774_010 Hb_077774_010 Hb_026124_020--Hb_077774_010 Hb_001401_120--Hb_009117_020 Hb_001401_120--Hb_007579_030 Hb_029238_040 Hb_029238_040 Hb_001401_120--Hb_029238_040 Hb_001401_120--Hb_001366_300 Hb_115572_010 Hb_115572_010 Hb_009117_020--Hb_115572_010 Hb_011381_050 Hb_011381_050 Hb_009117_020--Hb_011381_050 Hb_005614_020 Hb_005614_020 Hb_009117_020--Hb_005614_020 Hb_009117_020--Hb_026124_020 Hb_000012_380--Hb_000245_110 Hb_003090_190 Hb_003090_190 Hb_000012_380--Hb_003090_190 Hb_042083_010 Hb_042083_010 Hb_000012_380--Hb_042083_010 Hb_000328_030 Hb_000328_030 Hb_000012_380--Hb_000328_030 Hb_000245_110--Hb_003090_190 Hb_000245_110--Hb_042083_010 Hb_000245_110--Hb_000328_030 Hb_000245_110--Hb_005614_020 Hb_001680_050 Hb_001680_050 Hb_007579_030--Hb_001680_050 Hb_029665_010 Hb_029665_010 Hb_007579_030--Hb_029665_010 Hb_007579_030--Hb_001366_300 Hb_007579_030--Hb_029238_040 Hb_000197_260 Hb_000197_260 Hb_007579_030--Hb_000197_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.5377 2.11992 21.3219 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0102442 11.2513

CAGE analysis