Hb_148346_010

Information

Type -
Description -
Location Contig148346: 33-1958
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148346_010 0.0 - - -
2 Hb_002539_050 0.1273064265 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
3 Hb_004678_030 0.1306131505 - - fructokinase [Manihot esculenta]
4 Hb_000654_050 0.1358597486 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
5 Hb_010315_100 0.1389664181 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
6 Hb_000003_740 0.1409688415 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
7 Hb_001882_150 0.1417256145 transcription factor TF Family: mTERF -
8 Hb_002235_370 0.1432029057 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
9 Hb_000363_180 0.1484637649 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
10 Hb_012308_050 0.1556456322 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
11 Hb_002897_010 0.1577769339 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
12 Hb_186247_010 0.158614334 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
13 Hb_000164_150 0.1588149103 - - serine/threonine-specific protein kinase, putative [Ricinus communis]
14 Hb_164926_050 0.1594670685 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
15 Hb_023226_030 0.15958589 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
16 Hb_002375_060 0.1605240484 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
17 Hb_000069_430 0.1609850442 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
18 Hb_006831_080 0.1653122735 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
19 Hb_001195_420 0.1660952992 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
20 Hb_055531_010 0.1664769684 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_148346_010 Hb_148346_010 Hb_002539_050 Hb_002539_050 Hb_148346_010--Hb_002539_050 Hb_004678_030 Hb_004678_030 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_010315_100 Hb_010315_100 Hb_148346_010--Hb_010315_100 Hb_000003_740 Hb_000003_740 Hb_148346_010--Hb_000003_740 Hb_001882_150 Hb_001882_150 Hb_148346_010--Hb_001882_150 Hb_186247_010 Hb_186247_010 Hb_002539_050--Hb_186247_010 Hb_003929_190 Hb_003929_190 Hb_002539_050--Hb_003929_190 Hb_000363_180 Hb_000363_180 Hb_002539_050--Hb_000363_180 Hb_002539_050--Hb_010315_100 Hb_004631_170 Hb_004631_170 Hb_002539_050--Hb_004631_170 Hb_004678_030--Hb_000654_050 Hb_000027_170 Hb_000027_170 Hb_004678_030--Hb_000027_170 Hb_002463_050 Hb_002463_050 Hb_004678_030--Hb_002463_050 Hb_001019_160 Hb_001019_160 Hb_004678_030--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_004678_030--Hb_000061_310 Hb_005245_140 Hb_005245_140 Hb_004678_030--Hb_005245_140 Hb_012308_050 Hb_012308_050 Hb_000654_050--Hb_012308_050 Hb_000654_050--Hb_002463_050 Hb_000320_270 Hb_000320_270 Hb_000654_050--Hb_000320_270 Hb_000654_050--Hb_000061_310 Hb_001054_040 Hb_001054_040 Hb_000654_050--Hb_001054_040 Hb_010315_100--Hb_000363_180 Hb_002235_370 Hb_002235_370 Hb_010315_100--Hb_002235_370 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_010315_100--Hb_186247_010 Hb_000196_010 Hb_000196_010 Hb_010315_100--Hb_000196_010 Hb_002518_200 Hb_002518_200 Hb_000003_740--Hb_002518_200 Hb_000692_210 Hb_000692_210 Hb_000003_740--Hb_000692_210 Hb_004920_050 Hb_004920_050 Hb_000003_740--Hb_004920_050 Hb_114943_020 Hb_114943_020 Hb_000003_740--Hb_114943_020 Hb_000015_150 Hb_000015_150 Hb_000003_740--Hb_000015_150 Hb_001882_150--Hb_002539_050 Hb_083493_010 Hb_083493_010 Hb_001882_150--Hb_083493_010 Hb_000164_150 Hb_000164_150 Hb_001882_150--Hb_000164_150 Hb_001882_150--Hb_000003_740 Hb_005694_180 Hb_005694_180 Hb_001882_150--Hb_005694_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.642 8.04354 10.0913 12.2996 1.06565 1.32609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205518 0.161516 0 4.93815 2.33983

CAGE analysis