Hb_148392_010

Information

Type -
Description -
Location Contig148392: 33-681
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DNQ8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148392_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_005194_030 0.1309955498 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
3 Hb_009558_040 0.1546669906 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
4 Hb_144831_010 0.165005037 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
5 Hb_000770_030 0.1677980492 - - -
6 Hb_028900_010 0.1691384994 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
7 Hb_014497_090 0.1704517824 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
8 Hb_002813_010 0.1709064516 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
9 Hb_002374_280 0.1719746335 - - -
10 Hb_004543_030 0.1723931791 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
11 Hb_002524_040 0.1726228802 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
12 Hb_002659_060 0.1730499638 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
13 Hb_011512_060 0.1733991753 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
14 Hb_003858_090 0.1759023578 - - Filamin-A-interacting protein, putative [Ricinus communis]
15 Hb_000011_210 0.1762093268 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
16 Hb_011609_050 0.176731968 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
17 Hb_017438_020 0.1768100507 - - -
18 Hb_001902_060 0.1783157771 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
19 Hb_000487_420 0.178509167 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
20 Hb_000317_150 0.1792338672 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_148392_010 Hb_148392_010 Hb_005194_030 Hb_005194_030 Hb_148392_010--Hb_005194_030 Hb_009558_040 Hb_009558_040 Hb_148392_010--Hb_009558_040 Hb_144831_010 Hb_144831_010 Hb_148392_010--Hb_144831_010 Hb_000770_030 Hb_000770_030 Hb_148392_010--Hb_000770_030 Hb_028900_010 Hb_028900_010 Hb_148392_010--Hb_028900_010 Hb_014497_090 Hb_014497_090 Hb_148392_010--Hb_014497_090 Hb_002745_010 Hb_002745_010 Hb_005194_030--Hb_002745_010 Hb_000243_380 Hb_000243_380 Hb_005194_030--Hb_000243_380 Hb_001511_110 Hb_001511_110 Hb_005194_030--Hb_001511_110 Hb_029223_050 Hb_029223_050 Hb_005194_030--Hb_029223_050 Hb_003206_030 Hb_003206_030 Hb_005194_030--Hb_003206_030 Hb_011512_060 Hb_011512_060 Hb_009558_040--Hb_011512_060 Hb_000317_150 Hb_000317_150 Hb_009558_040--Hb_000317_150 Hb_027073_060 Hb_027073_060 Hb_009558_040--Hb_027073_060 Hb_002499_070 Hb_002499_070 Hb_009558_040--Hb_002499_070 Hb_007885_070 Hb_007885_070 Hb_009558_040--Hb_007885_070 Hb_003540_160 Hb_003540_160 Hb_009558_040--Hb_003540_160 Hb_128743_010 Hb_128743_010 Hb_144831_010--Hb_128743_010 Hb_004108_100 Hb_004108_100 Hb_144831_010--Hb_004108_100 Hb_003785_040 Hb_003785_040 Hb_144831_010--Hb_003785_040 Hb_000960_100 Hb_000960_100 Hb_144831_010--Hb_000960_100 Hb_001718_090 Hb_001718_090 Hb_144831_010--Hb_001718_090 Hb_000032_010 Hb_000032_010 Hb_144831_010--Hb_000032_010 Hb_002276_050 Hb_002276_050 Hb_000770_030--Hb_002276_050 Hb_009767_090 Hb_009767_090 Hb_000770_030--Hb_009767_090 Hb_003216_120 Hb_003216_120 Hb_000770_030--Hb_003216_120 Hb_000422_140 Hb_000422_140 Hb_000770_030--Hb_000422_140 Hb_004899_030 Hb_004899_030 Hb_000770_030--Hb_004899_030 Hb_021888_150 Hb_021888_150 Hb_000770_030--Hb_021888_150 Hb_003849_250 Hb_003849_250 Hb_028900_010--Hb_003849_250 Hb_000487_110 Hb_000487_110 Hb_028900_010--Hb_000487_110 Hb_000116_180 Hb_000116_180 Hb_028900_010--Hb_000116_180 Hb_002374_280 Hb_002374_280 Hb_028900_010--Hb_002374_280 Hb_002527_030 Hb_002527_030 Hb_028900_010--Hb_002527_030 Hb_008406_110 Hb_008406_110 Hb_028900_010--Hb_008406_110 Hb_002524_040 Hb_002524_040 Hb_014497_090--Hb_002524_040 Hb_004543_030 Hb_004543_030 Hb_014497_090--Hb_004543_030 Hb_000832_300 Hb_000832_300 Hb_014497_090--Hb_000832_300 Hb_002084_040 Hb_002084_040 Hb_014497_090--Hb_002084_040 Hb_034243_020 Hb_034243_020 Hb_014497_090--Hb_034243_020 Hb_004884_010 Hb_004884_010 Hb_014497_090--Hb_004884_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.513674 0.732385 0.159188 0.0400474 0.859506 0.335515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.388488 0.229 0.134014 0.156281 0.445003

CAGE analysis