Hb_148593_010

Information

Type -
Description -
Location Contig148593: 961-1513
Sequence    

Annotation

kegg
ID rcu:RCOM_0975960
description Serine/threonine-protein kinase ATR, putative (EC:2.7.11.1)
nr
ID XP_012077734.1
description PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
swissprot
ID Q9FKS4
description Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2
trembl
ID M1BLQ7
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402018643 PE=4 SV=1
Gene Ontology
ID GO:0009506
description serine threonine-protein kinase atr isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12213: 1019-1481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148593_010 0.0 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
2 Hb_003805_070 0.1453236021 - - PREDICTED: sacsin [Jatropha curcas]
3 Hb_006452_240 0.1768114685 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
4 Hb_001341_020 0.1875906014 - - Uncharacterised protein [Bordetella pertussis]
5 Hb_000236_450 0.2037057564 - - coated vesicle membrane protein, putative [Ricinus communis]
6 Hb_011616_020 0.2148259769 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
7 Hb_005523_010 0.2255286203 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
8 Hb_008123_010 0.2302092843 - - -
9 Hb_001912_080 0.2306983058 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
10 Hb_003944_020 0.2335098096 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
11 Hb_005396_060 0.2356012394 - - -
12 Hb_044380_020 0.2421669617 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_012305_090 0.2498590437 - - hypothetical protein VITISV_018166 [Vitis vinifera]
14 Hb_000062_450 0.2516024816 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
15 Hb_066487_010 0.2565180117 - - conserved hypothetical protein [Ricinus communis]
16 Hb_090530_010 0.2577937167 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_099270_030 0.2591448143 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
18 Hb_005250_030 0.2591788769 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
19 Hb_156279_010 0.2592036542 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
20 Hb_030131_030 0.260277766 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_148593_010 Hb_148593_010 Hb_003805_070 Hb_003805_070 Hb_148593_010--Hb_003805_070 Hb_006452_240 Hb_006452_240 Hb_148593_010--Hb_006452_240 Hb_001341_020 Hb_001341_020 Hb_148593_010--Hb_001341_020 Hb_000236_450 Hb_000236_450 Hb_148593_010--Hb_000236_450 Hb_011616_020 Hb_011616_020 Hb_148593_010--Hb_011616_020 Hb_005523_010 Hb_005523_010 Hb_148593_010--Hb_005523_010 Hb_003805_070--Hb_006452_240 Hb_003805_070--Hb_005523_010 Hb_003805_070--Hb_011616_020 Hb_099270_030 Hb_099270_030 Hb_003805_070--Hb_099270_030 Hb_001912_080 Hb_001912_080 Hb_003805_070--Hb_001912_080 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_006452_240--Hb_001341_020 Hb_001223_010 Hb_001223_010 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_002226_050 Hb_002226_050 Hb_001341_020--Hb_002226_050 Hb_000022_140 Hb_000022_140 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_000236_450--Hb_011616_020 Hb_008123_010 Hb_008123_010 Hb_000236_450--Hb_008123_010 Hb_031658_040 Hb_031658_040 Hb_000236_450--Hb_031658_040 Hb_002518_120 Hb_002518_120 Hb_000236_450--Hb_002518_120 Hb_000236_450--Hb_003805_070 Hb_002368_070 Hb_002368_070 Hb_000236_450--Hb_002368_070 Hb_005250_030 Hb_005250_030 Hb_011616_020--Hb_005250_030 Hb_011616_020--Hb_005523_010 Hb_000062_450 Hb_000062_450 Hb_011616_020--Hb_000062_450 Hb_156279_010 Hb_156279_010 Hb_011616_020--Hb_156279_010 Hb_003632_030 Hb_003632_030 Hb_011616_020--Hb_003632_030 Hb_000815_170 Hb_000815_170 Hb_011616_020--Hb_000815_170 Hb_005523_010--Hb_005250_030 Hb_010757_030 Hb_010757_030 Hb_005523_010--Hb_010757_030 Hb_002986_070 Hb_002986_070 Hb_005523_010--Hb_002986_070 Hb_000529_140 Hb_000529_140 Hb_005523_010--Hb_000529_140 Hb_013459_010 Hb_013459_010 Hb_005523_010--Hb_013459_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.615353 1.02672 0 0.294971 1.09795 2.08169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165694 0.260293 0.857175 2.79804 5.66173

CAGE analysis