Hb_148644_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig148644: 4753-5967
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID XP_002529476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12274: 4611-4952 , PASA_asmbl_12275: 5602-5795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148644_010 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_002835_080 0.0567185724 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
3 Hb_000700_110 0.0610155113 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_004032_150 0.0624679645 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
5 Hb_002477_330 0.0643018139 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
6 Hb_000035_320 0.0654177969 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
7 Hb_003195_070 0.0692148153 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_000365_390 0.0711062934 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
9 Hb_000959_260 0.0711842216 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
10 Hb_000045_090 0.0718213439 - - PREDICTED: syntaxin-31 [Jatropha curcas]
11 Hb_004767_100 0.0718295823 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
12 Hb_019280_040 0.0721673477 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_007416_280 0.0752083266 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001638_170 0.0760308712 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
15 Hb_006332_010 0.0761445912 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
16 Hb_002811_360 0.0778608624 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
17 Hb_010504_020 0.0782712631 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_000976_410 0.0796022491 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_000010_330 0.0796201293 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
20 Hb_000953_020 0.0806715529 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]

Gene co-expression network

sample Hb_148644_010 Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_148644_010--Hb_002835_080 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_004032_150 Hb_004032_150 Hb_148644_010--Hb_004032_150 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_019280_040 Hb_019280_040 Hb_002835_080--Hb_019280_040 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_000700_110--Hb_002477_330 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_010504_020 Hb_010504_020 Hb_002477_330--Hb_010504_020 Hb_000103_090 Hb_000103_090 Hb_002477_330--Hb_000103_090 Hb_004128_190 Hb_004128_190 Hb_002477_330--Hb_004128_190 Hb_000045_090 Hb_000045_090 Hb_002477_330--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_002477_330--Hb_143398_010 Hb_000976_410 Hb_000976_410 Hb_000035_320--Hb_000976_410 Hb_000671_050 Hb_000671_050 Hb_000035_320--Hb_000671_050 Hb_000035_320--Hb_002835_080 Hb_001538_130 Hb_001538_130 Hb_000035_320--Hb_001538_130 Hb_000035_320--Hb_004032_150 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_003195_070--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_003195_070--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_002200_080 Hb_002200_080 Hb_003195_070--Hb_002200_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06797 2.42735 1.45763 3.64683 3.53084 6.91387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63682 4.43352 5.03359 2.79564 2.40939

CAGE analysis