Hb_148908_020

Information

Type -
Description -
Location Contig148908: 4001-8348
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148908_020 0.0 - - -
2 Hb_004297_060 0.0146694056 - - Cucumisin protein [Theobroma cacao]
3 Hb_000608_130 0.1775231167 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_001437_290 0.2724987273 - - -
5 Hb_000080_050 0.2923154556 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Vitis vinifera]
6 Hb_082730_010 0.3023692857 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
7 Hb_094245_010 0.3052564569 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_001863_060 0.3080771184 - - PIF-like transposase [Daucus carota]
9 Hb_092027_010 0.3115528216 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
10 Hb_076693_010 0.3115575129 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
11 Hb_011707_010 0.3115592284 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_008031_020 0.3145100077 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_001831_020 0.3145768867 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_000058_220 0.3147050437 - - hypothetical protein, partial [Staphylococcus aureus]
15 Hb_019677_010 0.3147487345 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_048125_010 0.3152255104 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
17 Hb_012522_020 0.3156318099 - - -
18 Hb_011037_010 0.3242729123 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
19 Hb_003058_050 0.3245854656 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_002099_020 0.3250648799 - - cysteine proteinase inhibitor-like [Jatropha curcas]

Gene co-expression network

sample Hb_148908_020 Hb_148908_020 Hb_004297_060 Hb_004297_060 Hb_148908_020--Hb_004297_060 Hb_000608_130 Hb_000608_130 Hb_148908_020--Hb_000608_130 Hb_001437_290 Hb_001437_290 Hb_148908_020--Hb_001437_290 Hb_000080_050 Hb_000080_050 Hb_148908_020--Hb_000080_050 Hb_082730_010 Hb_082730_010 Hb_148908_020--Hb_082730_010 Hb_094245_010 Hb_094245_010 Hb_148908_020--Hb_094245_010 Hb_004297_060--Hb_000608_130 Hb_004297_060--Hb_001437_290 Hb_004297_060--Hb_000080_050 Hb_011707_010 Hb_011707_010 Hb_004297_060--Hb_011707_010 Hb_076693_010 Hb_076693_010 Hb_004297_060--Hb_076693_010 Hb_000608_130--Hb_000080_050 Hb_007713_020 Hb_007713_020 Hb_000608_130--Hb_007713_020 Hb_012522_020 Hb_012522_020 Hb_000608_130--Hb_012522_020 Hb_048125_010 Hb_048125_010 Hb_000608_130--Hb_048125_010 Hb_001135_230 Hb_001135_230 Hb_001437_290--Hb_001135_230 Hb_009777_010 Hb_009777_010 Hb_001437_290--Hb_009777_010 Hb_000205_170 Hb_000205_170 Hb_001437_290--Hb_000205_170 Hb_002099_020 Hb_002099_020 Hb_001437_290--Hb_002099_020 Hb_000080_050--Hb_007713_020 Hb_000345_470 Hb_000345_470 Hb_000080_050--Hb_000345_470 Hb_000080_050--Hb_012522_020 Hb_002240_080 Hb_002240_080 Hb_082730_010--Hb_002240_080 Hb_011457_020 Hb_011457_020 Hb_082730_010--Hb_011457_020 Hb_082730_010--Hb_094245_010 Hb_082730_010--Hb_004297_060 Hb_002180_010 Hb_002180_010 Hb_082730_010--Hb_002180_010 Hb_003371_240 Hb_003371_240 Hb_094245_010--Hb_003371_240 Hb_094245_010--Hb_004297_060 Hb_094245_010--Hb_000608_130 Hb_032299_050 Hb_032299_050 Hb_094245_010--Hb_032299_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131816 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237866 0 0 0.0817514 0

CAGE analysis