Hb_148912_010

Information

Type -
Description -
Location Contig148912: 12252-20298
Sequence    

Annotation

kegg
ID rcu:RCOM_0814490
description hypothetical protein
nr
ID XP_002518818.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S8T8
description Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana GN=PCR10 PE=2 SV=1
trembl
ID B9RY51
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0814490 PE=4 SV=1
Gene Ontology
ID GO:0006661
description protein plant cadmium resistance 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12386: 13144-20127 , PASA_asmbl_12387: 16885-17285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148912_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003038_030 0.0500565486 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
3 Hb_000172_370 0.0503287756 - - -
4 Hb_002411_170 0.0633045795 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
5 Hb_063716_050 0.0634459743 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
6 Hb_000395_170 0.0669971484 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
7 Hb_125000_010 0.0686330731 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
8 Hb_004440_090 0.0698678513 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
9 Hb_000089_220 0.0705621288 - - PREDICTED: protein FAM133-like [Populus euphratica]
10 Hb_003005_020 0.0707136776 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
11 Hb_007576_040 0.0720068871 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
12 Hb_004195_160 0.0724118222 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
13 Hb_004545_060 0.0733648323 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
14 Hb_010436_070 0.0741416258 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
15 Hb_000398_180 0.0744740374 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
16 Hb_003001_120 0.0748108773 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_001195_760 0.0748427433 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
18 Hb_011689_080 0.0752815383 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
19 Hb_003642_060 0.075641336 - - hypothetical protein RCOM_1189860 [Ricinus communis]
20 Hb_001604_080 0.0758273583 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]

Gene co-expression network

sample Hb_148912_010 Hb_148912_010 Hb_003038_030 Hb_003038_030 Hb_148912_010--Hb_003038_030 Hb_000172_370 Hb_000172_370 Hb_148912_010--Hb_000172_370 Hb_002411_170 Hb_002411_170 Hb_148912_010--Hb_002411_170 Hb_063716_050 Hb_063716_050 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_125000_010 Hb_125000_010 Hb_148912_010--Hb_125000_010 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_002411_170--Hb_125000_010 Hb_010180_020 Hb_010180_020 Hb_002411_170--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_002411_170--Hb_001604_080 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140 Hb_063716_050--Hb_001604_080 Hb_003175_010 Hb_003175_010 Hb_000395_170--Hb_003175_010 Hb_000926_280 Hb_000926_280 Hb_000395_170--Hb_000926_280 Hb_048937_040 Hb_048937_040 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_004109_090 Hb_004109_090 Hb_000395_170--Hb_004109_090 Hb_125000_010--Hb_010436_070 Hb_009711_030 Hb_009711_030 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_125000_010--Hb_118419_020 Hb_022250_040 Hb_022250_040 Hb_125000_010--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0941 5.0602 8.40133 8.30239 19.3487 23.5952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4247 20.6846 15.5702 5.8709 4.62666

CAGE analysis