Hb_148986_010

Information

Type -
Description -
Location Contig148986: 1302-3413
Sequence    

Annotation

kegg
ID vvi:100252918
description tropinone reductase homolog
nr
ID CBI30506.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P50165
description Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1
trembl
ID D7THJ0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00920 PE=3 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148986_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_019392_010 0.0326120054 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
3 Hb_006925_010 0.0343423158 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
4 Hb_000684_060 0.0430337129 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
5 Hb_001266_110 0.0458544133 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003334_020 0.046197759 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
7 Hb_000086_710 0.0471258541 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
8 Hb_000329_160 0.0522159394 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
9 Hb_080238_010 0.0600485207 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_004057_050 0.0635875633 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
11 Hb_000958_180 0.0661846533 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
12 Hb_058620_050 0.0738125008 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
13 Hb_058620_040 0.0738678124 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
14 Hb_185391_010 0.0758247327 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
15 Hb_001266_090 0.08503251 - - -
16 Hb_003663_030 0.0868660646 - - PREDICTED: early nodulin-93-like [Jatropha curcas]
17 Hb_002929_010 0.0888440873 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
18 Hb_000315_110 0.0901475035 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
19 Hb_003334_080 0.0903861275 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_109163_010 0.090786019 - - polyphenol oxidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_148986_010 Hb_148986_010 Hb_019392_010 Hb_019392_010 Hb_148986_010--Hb_019392_010 Hb_006925_010 Hb_006925_010 Hb_148986_010--Hb_006925_010 Hb_000684_060 Hb_000684_060 Hb_148986_010--Hb_000684_060 Hb_001266_110 Hb_001266_110 Hb_148986_010--Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_148986_010--Hb_003334_020 Hb_000086_710 Hb_000086_710 Hb_148986_010--Hb_000086_710 Hb_019392_010--Hb_000086_710 Hb_019392_010--Hb_006925_010 Hb_019392_010--Hb_001266_110 Hb_019392_010--Hb_003334_020 Hb_000958_180 Hb_000958_180 Hb_019392_010--Hb_000958_180 Hb_006925_010--Hb_001266_110 Hb_006925_010--Hb_003334_020 Hb_080238_010 Hb_080238_010 Hb_006925_010--Hb_080238_010 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_000684_060--Hb_080238_010 Hb_002929_010 Hb_002929_010 Hb_000684_060--Hb_002929_010 Hb_000684_060--Hb_003334_020 Hb_000684_060--Hb_006925_010 Hb_003663_030 Hb_003663_030 Hb_000684_060--Hb_003663_030 Hb_001266_110--Hb_003334_020 Hb_001266_110--Hb_000086_710 Hb_004057_050 Hb_004057_050 Hb_001266_110--Hb_004057_050 Hb_003334_020--Hb_000086_710 Hb_003334_020--Hb_004057_050 Hb_003334_020--Hb_080238_010 Hb_000086_710--Hb_004057_050 Hb_000086_710--Hb_006925_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.159155 0.0855205 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.66824 0

CAGE analysis