Hb_149225_010

Information

Type -
Description -
Location Contig149225: 4513-7789
Sequence    

Annotation

kegg
ID rcu:RCOM_0881710
description hypothetical protein
nr
ID XP_007026416.1
description DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
swissprot
ID Q6DBA5
description DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana GN=NRPD4 PE=1 SV=2
trembl
ID A0A061GHY5
description DNA-directed RNA polymerase II subunit rpb4, putative isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_030466 PE=4 SV=1
Gene Ontology
ID GO:0055029
description dna-directed rna polymerases iv and v subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149225_010 0.0 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
2 Hb_002400_330 0.1069511627 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
3 Hb_012194_050 0.124314378 - - Aspartyl aminopeptidase, putative [Ricinus communis]
4 Hb_000718_080 0.1454060055 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
5 Hb_002600_140 0.145760667 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
6 Hb_041828_010 0.1458894205 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
7 Hb_007026_040 0.1488846583 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
8 Hb_142328_010 0.1530107892 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
9 Hb_008484_010 0.1539090269 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
10 Hb_028912_040 0.1567241188 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
11 Hb_000784_070 0.1584117818 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
12 Hb_127552_060 0.1596919464 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
13 Hb_001416_070 0.1600770834 - - oxidoreductase, putative [Ricinus communis]
14 Hb_005078_010 0.1621969694 - - Derlin-2, putative [Ricinus communis]
15 Hb_152202_010 0.1626234133 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
16 Hb_001014_110 0.1633928151 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
17 Hb_009119_040 0.1641775908 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
18 Hb_041290_010 0.1643534582 - - thioredoxin family protein [Populus trichocarpa]
19 Hb_000010_140 0.1648616062 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_009529_040 0.1652778643 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]

Gene co-expression network

sample Hb_149225_010 Hb_149225_010 Hb_002400_330 Hb_002400_330 Hb_149225_010--Hb_002400_330 Hb_012194_050 Hb_012194_050 Hb_149225_010--Hb_012194_050 Hb_000718_080 Hb_000718_080 Hb_149225_010--Hb_000718_080 Hb_002600_140 Hb_002600_140 Hb_149225_010--Hb_002600_140 Hb_041828_010 Hb_041828_010 Hb_149225_010--Hb_041828_010 Hb_007026_040 Hb_007026_040 Hb_149225_010--Hb_007026_040 Hb_008484_010 Hb_008484_010 Hb_002400_330--Hb_008484_010 Hb_002611_020 Hb_002611_020 Hb_002400_330--Hb_002611_020 Hb_002400_330--Hb_041828_010 Hb_050912_010 Hb_050912_010 Hb_002400_330--Hb_050912_010 Hb_004659_020 Hb_004659_020 Hb_002400_330--Hb_004659_020 Hb_152202_010 Hb_152202_010 Hb_012194_050--Hb_152202_010 Hb_001416_070 Hb_001416_070 Hb_012194_050--Hb_001416_070 Hb_005078_010 Hb_005078_010 Hb_012194_050--Hb_005078_010 Hb_003010_020 Hb_003010_020 Hb_012194_050--Hb_003010_020 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_032050_040 Hb_032050_040 Hb_012194_050--Hb_032050_040 Hb_000784_070 Hb_000784_070 Hb_000718_080--Hb_000784_070 Hb_000718_080--Hb_032050_040 Hb_012322_010 Hb_012322_010 Hb_000718_080--Hb_012322_010 Hb_000429_150 Hb_000429_150 Hb_000718_080--Hb_000429_150 Hb_000830_030 Hb_000830_030 Hb_000718_080--Hb_000830_030 Hb_000718_080--Hb_152202_010 Hb_011716_020 Hb_011716_020 Hb_002600_140--Hb_011716_020 Hb_002974_060 Hb_002974_060 Hb_002600_140--Hb_002974_060 Hb_000236_310 Hb_000236_310 Hb_002600_140--Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_002600_140--Hb_005228_130 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_041828_010--Hb_008484_010 Hb_000004_030 Hb_000004_030 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_000345_360 Hb_000345_360 Hb_041828_010--Hb_000345_360 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_103760_010 Hb_103760_010 Hb_007026_040--Hb_103760_010 Hb_007026_040--Hb_000236_310 Hb_007026_040--Hb_032050_040 Hb_007026_040--Hb_000718_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16305 0.590148 0.785536 3.27539 2.74534 5.64926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25768 1.27104 0.749237 2.19117 3.31926

CAGE analysis