Hb_149495_010

Information

Type -
Description -
Location Contig149495: 33-257
Sequence    

Annotation

kegg
ID gmx:100800659
description alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic-like
nr
ID ABK97438.1
description putative starch phosphorylase, partial [Sorghum bicolor]
swissprot
ID P04045
description Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2
trembl
ID A5Y3M1
description Putative starch phosphorylase (Fragment) OS=Sorghum bicolor PE=3 SV=1
Gene Ontology
ID GO:0008184
description starch partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149495_010 0.0 - - putative starch phosphorylase, partial [Sorghum bicolor]
2 Hb_027136_030 0.0004956658 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_002289_160 0.0009279322 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_099538_020 0.0066738037 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
5 Hb_010261_070 0.0089676485 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
6 Hb_001922_140 0.0119409352 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005914_190 0.0126418094 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
8 Hb_003424_040 0.0133784757 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
9 Hb_157950_010 0.0146725262 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
10 Hb_073680_010 0.0147854004 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_005081_050 0.0166382378 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
12 Hb_003874_030 0.0198189895 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
13 Hb_000087_110 0.0234580595 - - conserved hypothetical protein [Ricinus communis]
14 Hb_049573_010 0.0249277565 - - conserved hypothetical protein [Ricinus communis]
15 Hb_093541_010 0.025420365 - - conserved hypothetical protein [Ricinus communis]
16 Hb_101724_010 0.0264642697 - - glutamate receptor family protein [Populus trichocarpa]
17 Hb_178734_010 0.0289184284 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
18 Hb_006198_160 0.0317238388 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
19 Hb_002783_290 0.0318917365 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
20 Hb_118730_050 0.0320217719 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]

Gene co-expression network

sample Hb_149495_010 Hb_149495_010 Hb_027136_030 Hb_027136_030 Hb_149495_010--Hb_027136_030 Hb_002289_160 Hb_002289_160 Hb_149495_010--Hb_002289_160 Hb_099538_020 Hb_099538_020 Hb_149495_010--Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_149495_010--Hb_010261_070 Hb_001922_140 Hb_001922_140 Hb_149495_010--Hb_001922_140 Hb_005914_190 Hb_005914_190 Hb_149495_010--Hb_005914_190 Hb_027136_030--Hb_002289_160 Hb_027136_030--Hb_099538_020 Hb_027136_030--Hb_010261_070 Hb_027136_030--Hb_005914_190 Hb_027136_030--Hb_001922_140 Hb_002289_160--Hb_099538_020 Hb_002289_160--Hb_010261_070 Hb_002289_160--Hb_005914_190 Hb_002289_160--Hb_001922_140 Hb_099538_020--Hb_010261_070 Hb_099538_020--Hb_005914_190 Hb_003874_030 Hb_003874_030 Hb_099538_020--Hb_003874_030 Hb_010261_070--Hb_005914_190 Hb_010261_070--Hb_003874_030 Hb_003424_040 Hb_003424_040 Hb_001922_140--Hb_003424_040 Hb_157950_010 Hb_157950_010 Hb_001922_140--Hb_157950_010 Hb_073680_010 Hb_073680_010 Hb_001922_140--Hb_073680_010 Hb_005081_050 Hb_005081_050 Hb_001922_140--Hb_005081_050 Hb_000087_110 Hb_000087_110 Hb_001922_140--Hb_000087_110 Hb_005914_190--Hb_003874_030 Hb_049573_010 Hb_049573_010 Hb_005914_190--Hb_049573_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.929148 9.82839 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis