Hb_149539_010

Information

Type -
Description -
Location Contig149539: 1003-2802
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149539_010 0.0 - - -
2 Hb_000637_120 0.2037564597 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
3 Hb_004668_100 0.2081706487 - - -
4 Hb_014549_020 0.2114322219 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
5 Hb_001100_010 0.2117248295 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
6 Hb_000316_020 0.2416192602 - - protein binding protein, putative [Ricinus communis]
7 Hb_003754_080 0.2556554025 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_004208_100 0.2591913679 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
9 Hb_004871_070 0.2598926276 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
10 Hb_000436_010 0.2640553106 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
11 Hb_006816_450 0.2676149617 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011316_120 0.2700994606 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
13 Hb_003647_030 0.2746029258 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
14 Hb_007304_040 0.279041233 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
15 Hb_001565_110 0.283226125 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
16 Hb_009314_010 0.283506541 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_004116_200 0.2849918332 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
18 Hb_002045_130 0.2858045849 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
19 Hb_001150_030 0.2877650701 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
20 Hb_001222_050 0.288573922 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_149539_010 Hb_149539_010 Hb_000637_120 Hb_000637_120 Hb_149539_010--Hb_000637_120 Hb_004668_100 Hb_004668_100 Hb_149539_010--Hb_004668_100 Hb_014549_020 Hb_014549_020 Hb_149539_010--Hb_014549_020 Hb_001100_010 Hb_001100_010 Hb_149539_010--Hb_001100_010 Hb_000316_020 Hb_000316_020 Hb_149539_010--Hb_000316_020 Hb_003754_080 Hb_003754_080 Hb_149539_010--Hb_003754_080 Hb_006816_450 Hb_006816_450 Hb_000637_120--Hb_006816_450 Hb_161072_010 Hb_161072_010 Hb_000637_120--Hb_161072_010 Hb_000436_010 Hb_000436_010 Hb_000637_120--Hb_000436_010 Hb_000637_120--Hb_001100_010 Hb_001799_080 Hb_001799_080 Hb_000637_120--Hb_001799_080 Hb_003647_030 Hb_003647_030 Hb_004668_100--Hb_003647_030 Hb_123051_020 Hb_123051_020 Hb_004668_100--Hb_123051_020 Hb_002407_080 Hb_002407_080 Hb_004668_100--Hb_002407_080 Hb_004871_070 Hb_004871_070 Hb_004668_100--Hb_004871_070 Hb_001258_060 Hb_001258_060 Hb_004668_100--Hb_001258_060 Hb_014549_020--Hb_001100_010 Hb_001766_100 Hb_001766_100 Hb_014549_020--Hb_001766_100 Hb_014549_020--Hb_000436_010 Hb_014549_020--Hb_006816_450 Hb_007161_010 Hb_007161_010 Hb_014549_020--Hb_007161_010 Hb_001005_070 Hb_001005_070 Hb_014549_020--Hb_001005_070 Hb_001100_010--Hb_006816_450 Hb_007304_040 Hb_007304_040 Hb_001100_010--Hb_007304_040 Hb_001100_010--Hb_000436_010 Hb_000157_010 Hb_000157_010 Hb_001100_010--Hb_000157_010 Hb_001100_010--Hb_001766_100 Hb_000161_150 Hb_000161_150 Hb_000316_020--Hb_000161_150 Hb_009314_010 Hb_009314_010 Hb_000316_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000316_020--Hb_000771_130 Hb_000432_050 Hb_000432_050 Hb_000316_020--Hb_000432_050 Hb_000316_020--Hb_003754_080 Hb_001538_140 Hb_001538_140 Hb_000316_020--Hb_001538_140 Hb_003754_080--Hb_000161_150 Hb_003754_080--Hb_000771_130 Hb_008516_040 Hb_008516_040 Hb_003754_080--Hb_008516_040 Hb_003913_080 Hb_003913_080 Hb_003754_080--Hb_003913_080 Hb_004208_100 Hb_004208_100 Hb_003754_080--Hb_004208_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367835 0.414497 0.135167 0.0628165 1.49624 0.605344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31196 1.03072 5.77857 4.49336 0

CAGE analysis