Hb_149882_010

Information

Type -
Description -
Location Contig149882: 241-820
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22000g
description POPTRDRAFT_762728; hypothetical protein
nr
ID XP_011046412.1
description PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID B9H9A6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22000g PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149882_010 0.0 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
2 Hb_002224_020 0.0388694516 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
3 Hb_127839_010 0.0776675041 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
4 Hb_087992_010 0.0850854102 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_003427_030 0.0869335205 - - -
6 Hb_000563_470 0.097958544 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
7 Hb_000185_180 0.1057892091 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
8 Hb_007632_070 0.1066008845 - - kinase, putative [Ricinus communis]
9 Hb_001863_330 0.1076134638 - - RNA-binding region-containing protein, putative [Ricinus communis]
10 Hb_001140_300 0.1172349053 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
11 Hb_000853_250 0.1215014107 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
12 Hb_016333_010 0.1241574194 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
13 Hb_025787_020 0.1318426884 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
14 Hb_000789_160 0.1344547459 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
15 Hb_007477_010 0.1349616864 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
16 Hb_005181_170 0.1430115519 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
17 Hb_004055_090 0.1435621079 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
18 Hb_000062_280 0.1438347906 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
19 Hb_001213_060 0.14515955 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
20 Hb_010264_020 0.1482423325 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_149882_010 Hb_149882_010 Hb_002224_020 Hb_002224_020 Hb_149882_010--Hb_002224_020 Hb_127839_010 Hb_127839_010 Hb_149882_010--Hb_127839_010 Hb_087992_010 Hb_087992_010 Hb_149882_010--Hb_087992_010 Hb_003427_030 Hb_003427_030 Hb_149882_010--Hb_003427_030 Hb_000563_470 Hb_000563_470 Hb_149882_010--Hb_000563_470 Hb_000185_180 Hb_000185_180 Hb_149882_010--Hb_000185_180 Hb_002224_020--Hb_003427_030 Hb_002224_020--Hb_087992_010 Hb_002224_020--Hb_000185_180 Hb_001863_330 Hb_001863_330 Hb_002224_020--Hb_001863_330 Hb_002224_020--Hb_127839_010 Hb_016333_010 Hb_016333_010 Hb_127839_010--Hb_016333_010 Hb_007632_070 Hb_007632_070 Hb_127839_010--Hb_007632_070 Hb_127839_010--Hb_087992_010 Hb_127839_010--Hb_001863_330 Hb_087992_010--Hb_001863_330 Hb_087992_010--Hb_016333_010 Hb_087992_010--Hb_007632_070 Hb_003427_030--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_003427_030--Hb_007477_010 Hb_003427_030--Hb_087992_010 Hb_000789_160 Hb_000789_160 Hb_003427_030--Hb_000789_160 Hb_000563_470--Hb_007632_070 Hb_000563_470--Hb_127839_010 Hb_000563_470--Hb_001863_330 Hb_000563_470--Hb_002224_020 Hb_000563_470--Hb_016333_010 Hb_000185_180--Hb_007477_010 Hb_000185_180--Hb_001863_330 Hb_000815_010 Hb_000815_010 Hb_000185_180--Hb_000815_010 Hb_174639_010 Hb_174639_010 Hb_000185_180--Hb_174639_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.366439 0.728553 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.102936 0.160675

CAGE analysis