Hb_149985_010

Information

Type -
Description -
Location Contig149985: 4940-13932
Sequence    

Annotation

kegg
ID cmo:103495880
description transcription initiation factor IIB-2
nr
ID XP_004150610.1
description PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
swissprot
ID Q9SS44
description Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1
trembl
ID A0A0A0KYQ5
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G415910 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor iib-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12485: 4860-13881 , PASA_asmbl_12486: 4879-5557
cDNA
(Sanger)
(ID:Location)		 009_K17.ab1: 4860-11259

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149985_010 0.0 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
2 Hb_004109_220 0.0452377666 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
3 Hb_000574_450 0.04910598 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
4 Hb_000359_060 0.0536770021 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
5 Hb_001016_120 0.054820028 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
6 Hb_005054_110 0.055634233 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
7 Hb_000049_210 0.0562811188 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
8 Hb_012022_040 0.0578611331 - - Protein SIS1, putative [Ricinus communis]
9 Hb_023001_040 0.0598377541 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
10 Hb_000260_350 0.059852607 - - conserved hypothetical protein [Ricinus communis]
11 Hb_168978_010 0.0647942806 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
12 Hb_004108_220 0.0666851413 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
13 Hb_000029_140 0.0678923151 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
14 Hb_001511_060 0.0707349401 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
15 Hb_003025_100 0.0708095348 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
16 Hb_000349_260 0.0712777491 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
17 Hb_000116_270 0.071364962 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
18 Hb_011218_090 0.0714795594 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
19 Hb_093458_040 0.0726141138 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_000856_010 0.0728838334 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]

Gene co-expression network

sample Hb_149985_010 Hb_149985_010 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_000359_060 Hb_000359_060 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_012022_040 Hb_012022_040 Hb_004109_220--Hb_012022_040 Hb_000288_030 Hb_000288_030 Hb_004109_220--Hb_000288_030 Hb_004109_220--Hb_000359_060 Hb_000928_070 Hb_000928_070 Hb_004109_220--Hb_000928_070 Hb_001511_060 Hb_001511_060 Hb_004109_220--Hb_001511_060 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_010515_020 Hb_010515_020 Hb_000574_450--Hb_010515_020 Hb_006452_120 Hb_006452_120 Hb_000574_450--Hb_006452_120 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_084646_010 Hb_084646_010 Hb_001016_120--Hb_084646_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_001016_120--Hb_005054_110 Hb_011386_010 Hb_011386_010 Hb_005054_110--Hb_011386_010 Hb_005054_110--Hb_000049_210 Hb_000260_350 Hb_000260_350 Hb_005054_110--Hb_000260_350 Hb_019863_070 Hb_019863_070 Hb_005054_110--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_005054_110--Hb_001304_110 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_000049_210--Hb_000890_150 Hb_008725_230 Hb_008725_230 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8906 20.8643 20.3362 35.8123 14.8782 18.6502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2279 31.3708 29.5772 29.3204 26.006

CAGE analysis