Hb_150069_020

Information

Type -
Description -
Location Contig150069: 10553-15178
Sequence    

Annotation

kegg
ID rcu:RCOM_0222510
description ribosome biogenesis regulatory protein, putative
nr
ID XP_012078765.1
description PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
swissprot
ID Q9SH88
description Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2
trembl
ID A0A067K8F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13312 PE=4 SV=1
Gene Ontology
ID GO:0005730
description ribosome biogenesis regulatory protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12555: 10501-15148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150069_020 0.0 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
2 Hb_003728_020 0.0622031387 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002272_250 0.0710092029 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_005527_050 0.0761423447 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
5 Hb_076787_010 0.0805042942 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
6 Hb_003453_020 0.0806551213 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
7 Hb_002249_140 0.0831306083 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
8 Hb_004096_170 0.0833773499 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
9 Hb_001741_140 0.0859831036 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
10 Hb_168918_020 0.086310013 - - pectin acetylesterase, putative [Ricinus communis]
11 Hb_000017_120 0.0867091239 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
12 Hb_000732_260 0.0890904429 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
13 Hb_000322_050 0.0896897938 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
14 Hb_001776_110 0.0903720852 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
15 Hb_033491_010 0.0925013974 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
16 Hb_000265_150 0.0925207928 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
17 Hb_000032_570 0.0929299448 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
18 Hb_003688_100 0.0931605261 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
19 Hb_159558_030 0.0938643098 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
20 Hb_004223_130 0.0940706253 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_150069_020 Hb_150069_020 Hb_003728_020 Hb_003728_020 Hb_150069_020--Hb_003728_020 Hb_002272_250 Hb_002272_250 Hb_150069_020--Hb_002272_250 Hb_005527_050 Hb_005527_050 Hb_150069_020--Hb_005527_050 Hb_076787_010 Hb_076787_010 Hb_150069_020--Hb_076787_010 Hb_003453_020 Hb_003453_020 Hb_150069_020--Hb_003453_020 Hb_002249_140 Hb_002249_140 Hb_150069_020--Hb_002249_140 Hb_003728_020--Hb_005527_050 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_002272_250--Hb_000032_570 Hb_002272_250--Hb_005527_050 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_000017_120 Hb_000017_120 Hb_002272_250--Hb_000017_120 Hb_005527_050--Hb_003453_020 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005527_050--Hb_000905_190 Hb_005063_040 Hb_005063_040 Hb_076787_010--Hb_005063_040 Hb_000085_060 Hb_000085_060 Hb_076787_010--Hb_000085_060 Hb_001776_110 Hb_001776_110 Hb_076787_010--Hb_001776_110 Hb_001862_190 Hb_001862_190 Hb_076787_010--Hb_001862_190 Hb_000179_170 Hb_000179_170 Hb_076787_010--Hb_000179_170 Hb_006692_030 Hb_006692_030 Hb_076787_010--Hb_006692_030 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_000771_110 Hb_000771_110 Hb_002249_140--Hb_000771_110 Hb_008725_250 Hb_008725_250 Hb_002249_140--Hb_008725_250 Hb_000732_260 Hb_000732_260 Hb_002249_140--Hb_000732_260 Hb_002044_090 Hb_002044_090 Hb_002249_140--Hb_002044_090 Hb_000481_010 Hb_000481_010 Hb_002249_140--Hb_000481_010 Hb_000784_090 Hb_000784_090 Hb_002249_140--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.0013 14.1878 13.9145 13.3744 75.8378 67.2813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.8418 51.9649 38.041 27.186 12.8373

CAGE analysis