Hb_150196_010

Information

Type -
Description -
Location Contig150196: 1823-3667
Sequence    

Annotation

kegg
ID rcu:RCOM_0390850
description DNA binding protein, putative
nr
ID XP_012064983.1
description PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L703
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05664 PE=4 SV=1
Gene Ontology
ID GO:0044238
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150196_010 0.0 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
2 Hb_008772_010 0.0942697026 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005496_010 0.0947106973 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
4 Hb_001454_120 0.1053991891 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004157_040 0.1098668149 - - Rab2 [Hevea brasiliensis]
6 Hb_000696_290 0.1101373865 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
7 Hb_000115_230 0.1171915218 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
8 Hb_143496_010 0.1172369834 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
9 Hb_000576_060 0.1195871784 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
10 Hb_008921_020 0.1206664861 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
11 Hb_011609_020 0.1241251998 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000258_250 0.1251879766 - - Origin recognition complex subunit, putative [Ricinus communis]
13 Hb_000115_220 0.1253416907 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
14 Hb_005645_010 0.1257474949 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
15 Hb_005063_050 0.125866702 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
16 Hb_000261_140 0.1262347029 - - -
17 Hb_006478_160 0.1267177802 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
18 Hb_003894_070 0.1274009129 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
19 Hb_000392_380 0.1284446414 - - ubiquitin-conjugating enzyme [Medicago truncatula]
20 Hb_000638_170 0.1285374765 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]

Gene co-expression network

sample Hb_150196_010 Hb_150196_010 Hb_008772_010 Hb_008772_010 Hb_150196_010--Hb_008772_010 Hb_005496_010 Hb_005496_010 Hb_150196_010--Hb_005496_010 Hb_001454_120 Hb_001454_120 Hb_150196_010--Hb_001454_120 Hb_004157_040 Hb_004157_040 Hb_150196_010--Hb_004157_040 Hb_000696_290 Hb_000696_290 Hb_150196_010--Hb_000696_290 Hb_000115_230 Hb_000115_230 Hb_150196_010--Hb_000115_230 Hb_006478_160 Hb_006478_160 Hb_008772_010--Hb_006478_160 Hb_012760_070 Hb_012760_070 Hb_008772_010--Hb_012760_070 Hb_000215_060 Hb_000215_060 Hb_008772_010--Hb_000215_060 Hb_008772_010--Hb_000115_230 Hb_000450_130 Hb_000450_130 Hb_008772_010--Hb_000450_130 Hb_000330_070 Hb_000330_070 Hb_005496_010--Hb_000330_070 Hb_000175_060 Hb_000175_060 Hb_005496_010--Hb_000175_060 Hb_000239_030 Hb_000239_030 Hb_005496_010--Hb_000239_030 Hb_005496_010--Hb_008772_010 Hb_000453_120 Hb_000453_120 Hb_005496_010--Hb_000453_120 Hb_143496_010 Hb_143496_010 Hb_001454_120--Hb_143496_010 Hb_032803_010 Hb_032803_010 Hb_001454_120--Hb_032803_010 Hb_027073_050 Hb_027073_050 Hb_001454_120--Hb_027073_050 Hb_005645_010 Hb_005645_010 Hb_001454_120--Hb_005645_010 Hb_007317_160 Hb_007317_160 Hb_001454_120--Hb_007317_160 Hb_000527_060 Hb_000527_060 Hb_004157_040--Hb_000527_060 Hb_024439_010 Hb_024439_010 Hb_004157_040--Hb_024439_010 Hb_000805_240 Hb_000805_240 Hb_004157_040--Hb_000805_240 Hb_006615_240 Hb_006615_240 Hb_004157_040--Hb_006615_240 Hb_004696_080 Hb_004696_080 Hb_004157_040--Hb_004696_080 Hb_000115_220 Hb_000115_220 Hb_004157_040--Hb_000115_220 Hb_000696_290--Hb_004157_040 Hb_006256_030 Hb_006256_030 Hb_000696_290--Hb_006256_030 Hb_011671_100 Hb_011671_100 Hb_000696_290--Hb_011671_100 Hb_116608_010 Hb_116608_010 Hb_000696_290--Hb_116608_010 Hb_004324_090 Hb_004324_090 Hb_000696_290--Hb_004324_090 Hb_000696_290--Hb_000115_220 Hb_000115_230--Hb_000239_030 Hb_015807_100 Hb_015807_100 Hb_000115_230--Hb_015807_100 Hb_001172_120 Hb_001172_120 Hb_000115_230--Hb_001172_120 Hb_007192_100 Hb_007192_100 Hb_000115_230--Hb_007192_100 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_000392_380 Hb_000392_380 Hb_000115_230--Hb_000392_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.479472 0.54292 0.816309 1.42607 1.11916 0.447153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30446 3.27806 1.75793 0.706787 0.355729

CAGE analysis