Hb_150346_010

Information

Type -
Description -
Location Contig150346: 3263-4156
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28640g
description POPTRDRAFT_562056; NBS-LRR resistance protein RGH2
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150346_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_000260_780 0.0862761921 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
3 Hb_027136_010 0.0889706477 - - hypothetical protein L484_010426 [Morus notabilis]
4 Hb_000284_230 0.101435359 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
5 Hb_178968_050 0.1090788336 - - PREDICTED: probable serine incorporator [Jatropha curcas]
6 Hb_000205_280 0.1131180648 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
7 Hb_000580_050 0.1138083188 - - -
8 Hb_000630_030 0.1149355923 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
9 Hb_006907_140 0.1175328004 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001103_090 0.1180553178 - - PREDICTED: patellin-3 [Populus euphratica]
11 Hb_007747_170 0.11812278 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
12 Hb_004109_370 0.1183413645 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_002902_080 0.1187983742 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
14 Hb_031931_020 0.1190907436 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
15 Hb_000140_450 0.1199479949 - - PREDICTED: calreticulin-3-like [Populus euphratica]
16 Hb_001194_020 0.1218853394 - - microtubule associated protein xmap215, putative [Ricinus communis]
17 Hb_004040_040 0.1219863496 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
18 Hb_012239_030 0.1224902737 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000098_050 0.1232463816 - - BnaCnng11900D [Brassica napus]
20 Hb_009252_050 0.1236623725 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_150346_010 Hb_150346_010 Hb_000260_780 Hb_000260_780 Hb_150346_010--Hb_000260_780 Hb_027136_010 Hb_027136_010 Hb_150346_010--Hb_027136_010 Hb_000284_230 Hb_000284_230 Hb_150346_010--Hb_000284_230 Hb_178968_050 Hb_178968_050 Hb_150346_010--Hb_178968_050 Hb_000205_280 Hb_000205_280 Hb_150346_010--Hb_000205_280 Hb_000580_050 Hb_000580_050 Hb_150346_010--Hb_000580_050 Hb_009252_050 Hb_009252_050 Hb_000260_780--Hb_009252_050 Hb_002092_070 Hb_002092_070 Hb_000260_780--Hb_002092_070 Hb_000260_780--Hb_000205_280 Hb_000358_100 Hb_000358_100 Hb_000260_780--Hb_000358_100 Hb_000260_780--Hb_000580_050 Hb_000020_160 Hb_000020_160 Hb_000260_780--Hb_000020_160 Hb_000635_200 Hb_000635_200 Hb_027136_010--Hb_000635_200 Hb_002375_110 Hb_002375_110 Hb_027136_010--Hb_002375_110 Hb_027136_010--Hb_178968_050 Hb_004040_040 Hb_004040_040 Hb_027136_010--Hb_004040_040 Hb_027136_010--Hb_000260_780 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_000284_230--Hb_006355_020 Hb_000608_230 Hb_000608_230 Hb_178968_050--Hb_000608_230 Hb_000130_020 Hb_000130_020 Hb_178968_050--Hb_000130_020 Hb_140049_080 Hb_140049_080 Hb_178968_050--Hb_140049_080 Hb_000365_030 Hb_000365_030 Hb_178968_050--Hb_000365_030 Hb_002686_040 Hb_002686_040 Hb_178968_050--Hb_002686_040 Hb_004109_370 Hb_004109_370 Hb_178968_050--Hb_004109_370 Hb_001103_090 Hb_001103_090 Hb_000205_280--Hb_001103_090 Hb_001159_030 Hb_001159_030 Hb_000205_280--Hb_001159_030 Hb_158845_060 Hb_158845_060 Hb_000205_280--Hb_158845_060 Hb_000784_080 Hb_000784_080 Hb_000205_280--Hb_000784_080 Hb_000054_040 Hb_000054_040 Hb_000205_280--Hb_000054_040 Hb_000856_300 Hb_000856_300 Hb_000580_050--Hb_000856_300 Hb_001558_040 Hb_001558_040 Hb_000580_050--Hb_001558_040 Hb_000243_300 Hb_000243_300 Hb_000580_050--Hb_000243_300 Hb_000172_340 Hb_000172_340 Hb_000580_050--Hb_000172_340 Hb_001085_110 Hb_001085_110 Hb_000580_050--Hb_001085_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.757668 1.55707 0.864886 2.15874 1.49828 1.33053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.350303 0.183654 0.335341 1.7778 1.21045

CAGE analysis