Hb_150486_010

Information

Type -
Description -
Location Contig150486: 1352-4412
Sequence    

Annotation

kegg
ID cic:CICLE_v100116733m
description hypothetical protein
nr
ID XP_006428296.1
description hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
swissprot
ID Q9SJG2
description Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=3 SV=1
trembl
ID V4SWG9
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100116733mg PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at5g18500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12672: 2128-3367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150486_010 0.0 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
2 Hb_000165_020 0.1153786176 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
3 Hb_001541_060 0.1198330844 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000108_180 0.1273171485 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
5 Hb_025645_020 0.139236519 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
6 Hb_000236_230 0.1524852767 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
7 Hb_001366_110 0.1546299601 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000176_080 0.1570924246 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
9 Hb_003177_040 0.1604720031 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
10 Hb_147745_010 0.1614238379 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
11 Hb_001214_040 0.1631343849 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
12 Hb_000251_120 0.1688905064 - - O-acetyltransferase, putative [Ricinus communis]
13 Hb_005183_130 0.1710014729 - - glycogenin, putative [Ricinus communis]
14 Hb_000193_210 0.1719204021 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
15 Hb_002686_130 0.175257162 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
16 Hb_003623_040 0.1762546923 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
17 Hb_000054_010 0.1821964737 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_004627_010 0.1823595795 - - conserved hypothetical protein [Ricinus communis]
19 Hb_116701_010 0.1844004389 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
20 Hb_004052_190 0.1938577161 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_150486_010 Hb_150486_010 Hb_000165_020 Hb_000165_020 Hb_150486_010--Hb_000165_020 Hb_001541_060 Hb_001541_060 Hb_150486_010--Hb_001541_060 Hb_000108_180 Hb_000108_180 Hb_150486_010--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_150486_010--Hb_025645_020 Hb_000236_230 Hb_000236_230 Hb_150486_010--Hb_000236_230 Hb_001366_110 Hb_001366_110 Hb_150486_010--Hb_001366_110 Hb_147745_010 Hb_147745_010 Hb_000165_020--Hb_147745_010 Hb_000165_020--Hb_000236_230 Hb_001214_040 Hb_001214_040 Hb_000165_020--Hb_001214_040 Hb_000165_020--Hb_001366_110 Hb_116701_010 Hb_116701_010 Hb_000165_020--Hb_116701_010 Hb_001541_060--Hb_000108_180 Hb_000251_120 Hb_000251_120 Hb_001541_060--Hb_000251_120 Hb_001541_060--Hb_001366_110 Hb_003177_040 Hb_003177_040 Hb_001541_060--Hb_003177_040 Hb_001541_060--Hb_000236_230 Hb_000108_180--Hb_003177_040 Hb_000108_180--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000108_180--Hb_001001_070 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_025645_020--Hb_003177_040 Hb_025645_020--Hb_000176_080 Hb_025645_020--Hb_000108_180 Hb_003623_040 Hb_003623_040 Hb_025645_020--Hb_003623_040 Hb_001789_100 Hb_001789_100 Hb_025645_020--Hb_001789_100 Hb_000428_040 Hb_000428_040 Hb_000236_230--Hb_000428_040 Hb_000236_230--Hb_001366_110 Hb_000236_230--Hb_000251_120 Hb_000236_230--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_000236_230--Hb_000130_350 Hb_000236_230--Hb_005183_130 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_001366_110--Hb_116701_010 Hb_001366_110--Hb_000130_350 Hb_001366_110--Hb_000108_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.51927 4.26145 7.78047 84.465 5.89298 5.11096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.753956 0.808952 5.99796 2.41761 38.4346

CAGE analysis