Hb_150528_010

Information

Type -
Description -
Location Contig150528: 3421-5061
Sequence    

Annotation

kegg
ID rcu:RCOM_0610240
description hypothetical protein
nr
ID XP_002522010.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7P1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0610240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150528_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004993_010 0.0900212274 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
3 Hb_004102_100 0.1130128266 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
4 Hb_041091_010 0.1131073306 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
5 Hb_004852_030 0.1239860204 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
6 Hb_000175_390 0.1267819902 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
7 Hb_024714_020 0.1370467145 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000906_060 0.1377275065 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
9 Hb_000291_120 0.1388923137 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
10 Hb_007441_070 0.1426574456 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
11 Hb_000803_150 0.1434393051 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
12 Hb_017168_010 0.1445738362 - - conserved hypothetical protein [Ricinus communis]
13 Hb_185467_020 0.144581997 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_185467_010 0.1445843597 - - -
15 Hb_109168_010 0.1448086978 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
16 Hb_004048_090 0.1448242184 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
17 Hb_002007_270 0.1450541811 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
18 Hb_182026_010 0.1465652965 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
19 Hb_000016_110 0.1468226787 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
20 Hb_022288_010 0.1470506857 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_150528_010 Hb_150528_010 Hb_004993_010 Hb_004993_010 Hb_150528_010--Hb_004993_010 Hb_004102_100 Hb_004102_100 Hb_150528_010--Hb_004102_100 Hb_041091_010 Hb_041091_010 Hb_150528_010--Hb_041091_010 Hb_004852_030 Hb_004852_030 Hb_150528_010--Hb_004852_030 Hb_000175_390 Hb_000175_390 Hb_150528_010--Hb_000175_390 Hb_024714_020 Hb_024714_020 Hb_150528_010--Hb_024714_020 Hb_004993_010--Hb_041091_010 Hb_185467_010 Hb_185467_010 Hb_004993_010--Hb_185467_010 Hb_007786_010 Hb_007786_010 Hb_004993_010--Hb_007786_010 Hb_004993_010--Hb_004852_030 Hb_001416_040 Hb_001416_040 Hb_004993_010--Hb_001416_040 Hb_004102_100--Hb_000175_390 Hb_073171_080 Hb_073171_080 Hb_004102_100--Hb_073171_080 Hb_000088_200 Hb_000088_200 Hb_004102_100--Hb_000088_200 Hb_004724_360 Hb_004724_360 Hb_004102_100--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_004102_100--Hb_000684_420 Hb_000035_400 Hb_000035_400 Hb_004102_100--Hb_000035_400 Hb_001584_110 Hb_001584_110 Hb_041091_010--Hb_001584_110 Hb_000803_150 Hb_000803_150 Hb_041091_010--Hb_000803_150 Hb_001871_040 Hb_001871_040 Hb_041091_010--Hb_001871_040 Hb_000077_050 Hb_000077_050 Hb_041091_010--Hb_000077_050 Hb_001504_160 Hb_001504_160 Hb_041091_010--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_041091_010--Hb_000076_080 Hb_004852_030--Hb_000803_150 Hb_002007_270 Hb_002007_270 Hb_004852_030--Hb_002007_270 Hb_185467_020 Hb_185467_020 Hb_004852_030--Hb_185467_020 Hb_066807_010 Hb_066807_010 Hb_004852_030--Hb_066807_010 Hb_000165_030 Hb_000165_030 Hb_004852_030--Hb_000165_030 Hb_001981_070 Hb_001981_070 Hb_004852_030--Hb_001981_070 Hb_000175_390--Hb_000088_200 Hb_009411_020 Hb_009411_020 Hb_000175_390--Hb_009411_020 Hb_004044_020 Hb_004044_020 Hb_000175_390--Hb_004044_020 Hb_007534_040 Hb_007534_040 Hb_000175_390--Hb_007534_040 Hb_000156_140 Hb_000156_140 Hb_000175_390--Hb_000156_140 Hb_010222_030 Hb_010222_030 Hb_024714_020--Hb_010222_030 Hb_024714_020--Hb_009411_020 Hb_000462_150 Hb_000462_150 Hb_024714_020--Hb_000462_150 Hb_003006_060 Hb_003006_060 Hb_024714_020--Hb_003006_060 Hb_024714_020--Hb_185467_010 Hb_000230_330 Hb_000230_330 Hb_024714_020--Hb_000230_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.602264 0.164814 0.118994 0.0762523 0.731876 0.856573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0867702 0.341038 0.362968 0.0834465 0.134037

CAGE analysis