Hb_150573_010

Information

Type transcription factor
Description TF Family: LIM
Location Contig150573: 975-1750
Sequence    

Annotation

kegg
ID rcu:RCOM_0834980
description Cysteine and glycine-rich protein, putative
nr
ID XP_002532425.1
description Cysteine and glycine-rich protein, putative [Ricinus communis]
swissprot
ID Q94JX5
description LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1
trembl
ID B9T2F6
description Cysteine and glycine-rich protein, putative OS=Ricinus communis GN=RCOM_0834980 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12683: 1179-1705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150573_010 0.0 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
2 Hb_004453_060 0.0667662268 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
3 Hb_009070_010 0.1107801921 - - Spermidine synthase, putative [Ricinus communis]
4 Hb_107658_010 0.1236475896 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
5 Hb_000227_300 0.1362580778 - - conserved hypothetical protein [Ricinus communis]
6 Hb_051408_010 0.1380153325 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_000922_050 0.1393680638 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
8 Hb_000000_320 0.1412821379 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
9 Hb_004374_170 0.1412923781 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
10 Hb_036029_020 0.1430169923 - - PREDICTED: patellin-3-like [Jatropha curcas]
11 Hb_002597_030 0.1452349104 - - -
12 Hb_004531_130 0.1472395511 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
13 Hb_002626_060 0.1477062287 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
14 Hb_001675_350 0.1478247301 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
15 Hb_001953_010 0.1479928408 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
16 Hb_003427_070 0.1492797431 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
17 Hb_025194_070 0.1500569885 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
18 Hb_023768_010 0.1507272844 - - -
19 Hb_000270_790 0.152145229 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
20 Hb_000739_190 0.1526282995 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_150573_010 Hb_150573_010 Hb_004453_060 Hb_004453_060 Hb_150573_010--Hb_004453_060 Hb_009070_010 Hb_009070_010 Hb_150573_010--Hb_009070_010 Hb_107658_010 Hb_107658_010 Hb_150573_010--Hb_107658_010 Hb_000227_300 Hb_000227_300 Hb_150573_010--Hb_000227_300 Hb_051408_010 Hb_051408_010 Hb_150573_010--Hb_051408_010 Hb_000922_050 Hb_000922_050 Hb_150573_010--Hb_000922_050 Hb_004732_070 Hb_004732_070 Hb_004453_060--Hb_004732_070 Hb_025194_070 Hb_025194_070 Hb_004453_060--Hb_025194_070 Hb_036029_020 Hb_036029_020 Hb_004453_060--Hb_036029_020 Hb_004453_060--Hb_107658_010 Hb_003427_070 Hb_003427_070 Hb_004453_060--Hb_003427_070 Hb_009070_010--Hb_000227_300 Hb_009070_010--Hb_051408_010 Hb_004531_130 Hb_004531_130 Hb_009070_010--Hb_004531_130 Hb_000000_320 Hb_000000_320 Hb_009070_010--Hb_000000_320 Hb_002626_060 Hb_002626_060 Hb_009070_010--Hb_002626_060 Hb_004112_070 Hb_004112_070 Hb_009070_010--Hb_004112_070 Hb_000011_260 Hb_000011_260 Hb_107658_010--Hb_000011_260 Hb_001369_190 Hb_001369_190 Hb_107658_010--Hb_001369_190 Hb_107658_010--Hb_036029_020 Hb_107658_010--Hb_004732_070 Hb_007426_190 Hb_007426_190 Hb_000227_300--Hb_007426_190 Hb_000861_060 Hb_000861_060 Hb_000227_300--Hb_000861_060 Hb_000227_300--Hb_051408_010 Hb_000227_300--Hb_004531_130 Hb_097292_010 Hb_097292_010 Hb_000227_300--Hb_097292_010 Hb_001032_080 Hb_001032_080 Hb_051408_010--Hb_001032_080 Hb_001333_030 Hb_001333_030 Hb_051408_010--Hb_001333_030 Hb_051408_010--Hb_007426_190 Hb_051408_010--Hb_002626_060 Hb_000085_410 Hb_000085_410 Hb_000922_050--Hb_000085_410 Hb_000922_050--Hb_003427_070 Hb_001110_060 Hb_001110_060 Hb_000922_050--Hb_001110_060 Hb_000684_110 Hb_000684_110 Hb_000922_050--Hb_000684_110 Hb_003175_120 Hb_003175_120 Hb_000922_050--Hb_003175_120 Hb_000922_050--Hb_025194_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.52242 57.6259 83.4998 203.674 4.24698 1.03388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.783175 15.8052

CAGE analysis