Hb_150651_040

Information

Type -
Description -
Location Contig150651: 18127-25443
Sequence    

Annotation

kegg
ID rcu:RCOM_1034270
description transporter, putative
nr
ID XP_012092744.1
description PREDICTED: random slug protein 5-like [Jatropha curcas]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID A0A067JBY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09855 PE=4 SV=1
Gene Ontology
ID GO:0005622
description random slug protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12691: 18142-25002 , PASA_asmbl_12692: 18299-25795
cDNA
(Sanger)
(ID:Location)		 023_K10.ab1: 18142-23661

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150651_040 0.0 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
2 Hb_005245_080 0.0611881126 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
3 Hb_005391_040 0.0643854445 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
4 Hb_000529_030 0.0697266936 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000457_180 0.074953723 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
6 Hb_001279_080 0.0824690214 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
7 Hb_000465_390 0.0828595363 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
8 Hb_010098_050 0.0852120998 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
9 Hb_001341_150 0.0854614989 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
10 Hb_028396_010 0.0874181969 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
11 Hb_006059_050 0.0878337821 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_002226_060 0.0896750467 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
13 Hb_001124_090 0.0915023211 - - acyl carrier protein, putative [Ricinus communis]
14 Hb_008013_050 0.0918832062 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
15 Hb_089995_010 0.0927190192 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
16 Hb_000030_290 0.0931896437 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
17 Hb_006153_110 0.0942911507 - - dimethylaniline monooxygenase, putative [Ricinus communis]
18 Hb_003018_010 0.0946842385 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
19 Hb_004102_070 0.0950897459 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
20 Hb_011512_070 0.0954739939 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_150651_040 Hb_150651_040 Hb_005245_080 Hb_005245_080 Hb_150651_040--Hb_005245_080 Hb_005391_040 Hb_005391_040 Hb_150651_040--Hb_005391_040 Hb_000529_030 Hb_000529_030 Hb_150651_040--Hb_000529_030 Hb_000457_180 Hb_000457_180 Hb_150651_040--Hb_000457_180 Hb_001279_080 Hb_001279_080 Hb_150651_040--Hb_001279_080 Hb_000465_390 Hb_000465_390 Hb_150651_040--Hb_000465_390 Hb_089995_010 Hb_089995_010 Hb_005245_080--Hb_089995_010 Hb_005245_080--Hb_005391_040 Hb_008013_050 Hb_008013_050 Hb_005245_080--Hb_008013_050 Hb_000030_290 Hb_000030_290 Hb_005245_080--Hb_000030_290 Hb_004724_270 Hb_004724_270 Hb_005245_080--Hb_004724_270 Hb_004734_040 Hb_004734_040 Hb_005391_040--Hb_004734_040 Hb_005391_040--Hb_089995_010 Hb_007894_060 Hb_007894_060 Hb_005391_040--Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_005391_040--Hb_007928_030 Hb_005391_040--Hb_000465_390 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_001195_480 Hb_001195_480 Hb_000529_030--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000529_030--Hb_011512_070 Hb_002226_060 Hb_002226_060 Hb_000529_030--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_000529_030--Hb_000656_240 Hb_001341_150 Hb_001341_150 Hb_000457_180--Hb_001341_150 Hb_003362_030 Hb_003362_030 Hb_000457_180--Hb_003362_030 Hb_008071_020 Hb_008071_020 Hb_000457_180--Hb_008071_020 Hb_012565_070 Hb_012565_070 Hb_000457_180--Hb_012565_070 Hb_000457_180--Hb_001279_080 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120 Hb_001386_040 Hb_001386_040 Hb_000465_390--Hb_001386_040 Hb_006693_020 Hb_006693_020 Hb_000465_390--Hb_006693_020 Hb_000431_170 Hb_000431_170 Hb_000465_390--Hb_000431_170 Hb_001863_430 Hb_001863_430 Hb_000465_390--Hb_001863_430 Hb_000465_390--Hb_000529_030 Hb_000948_160 Hb_000948_160 Hb_000465_390--Hb_000948_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8766 7.81884 19.2763 16.6167 11.9571 10.9515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.6056 31.4523 13.5723 14.2279 12.4508

CAGE analysis