Hb_150766_020

Information

Type -
Description -
Location Contig150766: 29900-31642
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN60490.1
description hypothetical protein VITISV_030841 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AQM5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein VITISV_030841

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150766_020 0.0 - - hypothetical protein VITISV_030841 [Vitis vinifera]
2 Hb_000157_080 0.1634430776 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
3 Hb_179812_010 0.1855783751 - - TdcA1-ORF1-ORF2 [Daucus carota]
4 Hb_004195_230 0.2169233285 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002025_210 0.2219878147 - - -
6 Hb_000994_110 0.2251266384 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009393_190 0.2549855474 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
8 Hb_000243_040 0.255248991 - - -
9 Hb_002073_010 0.2554710529 - - -
10 Hb_090158_010 0.2571515043 - - hypothetical protein RCOM_1968400 [Ricinus communis]
11 Hb_002388_010 0.2578249903 - - -
12 Hb_006541_090 0.2592623881 - - hypothetical protein VITISV_020777 [Vitis vinifera]
13 Hb_000007_460 0.2607135191 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
14 Hb_004669_030 0.2627815771 - - -
15 Hb_010504_030 0.2652486992 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
16 Hb_002168_010 0.265510419 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
17 Hb_013691_030 0.2660825748 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
18 Hb_005489_010 0.2664000997 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
19 Hb_095192_010 0.2666993987 - - hypothetical protein VITISV_043980 [Vitis vinifera]
20 Hb_182964_010 0.2683042493 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_150766_020 Hb_150766_020 Hb_000157_080 Hb_000157_080 Hb_150766_020--Hb_000157_080 Hb_179812_010 Hb_179812_010 Hb_150766_020--Hb_179812_010 Hb_004195_230 Hb_004195_230 Hb_150766_020--Hb_004195_230 Hb_002025_210 Hb_002025_210 Hb_150766_020--Hb_002025_210 Hb_000994_110 Hb_000994_110 Hb_150766_020--Hb_000994_110 Hb_009393_190 Hb_009393_190 Hb_150766_020--Hb_009393_190 Hb_000157_080--Hb_009393_190 Hb_000157_080--Hb_000994_110 Hb_000157_080--Hb_179812_010 Hb_000243_040 Hb_000243_040 Hb_000157_080--Hb_000243_040 Hb_000136_180 Hb_000136_180 Hb_000157_080--Hb_000136_180 Hb_005542_090 Hb_005542_090 Hb_179812_010--Hb_005542_090 Hb_179812_010--Hb_004195_230 Hb_002388_010 Hb_002388_010 Hb_179812_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_179812_010--Hb_002687_080 Hb_178620_010 Hb_178620_010 Hb_179812_010--Hb_178620_010 Hb_000868_050 Hb_000868_050 Hb_004195_230--Hb_000868_050 Hb_066913_010 Hb_066913_010 Hb_004195_230--Hb_066913_010 Hb_004669_030 Hb_004669_030 Hb_004195_230--Hb_004669_030 Hb_000789_150 Hb_000789_150 Hb_004195_230--Hb_000789_150 Hb_004195_230--Hb_002388_010 Hb_005489_010 Hb_005489_010 Hb_002025_210--Hb_005489_010 Hb_002344_120 Hb_002344_120 Hb_002025_210--Hb_002344_120 Hb_002025_210--Hb_000994_110 Hb_000665_110 Hb_000665_110 Hb_002025_210--Hb_000665_110 Hb_013492_010 Hb_013492_010 Hb_002025_210--Hb_013492_010 Hb_007545_050 Hb_007545_050 Hb_000994_110--Hb_007545_050 Hb_182964_010 Hb_182964_010 Hb_000994_110--Hb_182964_010 Hb_006995_040 Hb_006995_040 Hb_000994_110--Hb_006995_040 Hb_014834_140 Hb_014834_140 Hb_000994_110--Hb_014834_140 Hb_001233_020 Hb_001233_020 Hb_000994_110--Hb_001233_020 Hb_005367_010 Hb_005367_010 Hb_000994_110--Hb_005367_010 Hb_009615_020 Hb_009615_020 Hb_009393_190--Hb_009615_020 Hb_000574_280 Hb_000574_280 Hb_009393_190--Hb_000574_280 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_001437_090 Hb_001437_090 Hb_009393_190--Hb_001437_090 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0122059 0.0466354 0.12916 0.0475958 0.133226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0838417 0.0879516 0 0.0350628 0

CAGE analysis