Hb_151027_010

Information

Type -
Description -
Location Contig151027: 1680-7065
Sequence    

Annotation

kegg
ID rcu:RCOM_0179780
description (+)-delta-cadinene synthase isozyme A, putative (EC:4.2.3.13)
nr
ID XP_002522812.1
description (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
swissprot
ID B9S9Z3
description Alpha-copaene synthase OS=Ricinus communis GN=TPS1 PE=1 SV=1
trembl
ID A0A067L3D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00777 PE=4 SV=1
Gene Ontology
ID GO:0046872
description alpha-copaene synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12751: 6281-6732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151027_010 0.0 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
2 Hb_104362_020 0.0250553937 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_000174_130 0.0358940791 - - flowering locus T-like protein [Fagus crenata]
4 Hb_179367_010 0.0421757431 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_166700_010 0.0431546171 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_174829_030 0.0460738656 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004652_040 0.0624940367 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_103000_010 0.0630325377 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
9 Hb_002014_120 0.0654391809 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
10 Hb_001006_130 0.0698593104 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
11 Hb_001006_080 0.0728512853 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
12 Hb_000917_220 0.0744837508 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
13 Hb_000696_120 0.0770468681 - - PREDICTED: protein FD [Populus euphratica]
14 Hb_010080_040 0.0800166971 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003337_010 0.0806080535 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009838_030 0.085954023 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
17 Hb_003540_010 0.0866666116 - - -
18 Hb_000352_020 0.0884491221 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
19 Hb_003216_010 0.090145251 - - glycosyl hydrolase family protein [Populus trichocarpa]
20 Hb_000224_020 0.09115782 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]

Gene co-expression network

sample Hb_151027_010 Hb_151027_010 Hb_104362_020 Hb_104362_020 Hb_151027_010--Hb_104362_020 Hb_000174_130 Hb_000174_130 Hb_151027_010--Hb_000174_130 Hb_179367_010 Hb_179367_010 Hb_151027_010--Hb_179367_010 Hb_166700_010 Hb_166700_010 Hb_151027_010--Hb_166700_010 Hb_174829_030 Hb_174829_030 Hb_151027_010--Hb_174829_030 Hb_004652_040 Hb_004652_040 Hb_151027_010--Hb_004652_040 Hb_104362_020--Hb_179367_010 Hb_104362_020--Hb_000174_130 Hb_002014_120 Hb_002014_120 Hb_104362_020--Hb_002014_120 Hb_104362_020--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_104362_020--Hb_103000_010 Hb_000174_130--Hb_166700_010 Hb_000174_130--Hb_103000_010 Hb_000174_130--Hb_179367_010 Hb_000174_130--Hb_004652_040 Hb_179367_010--Hb_002014_120 Hb_179367_010--Hb_004652_040 Hb_179367_010--Hb_103000_010 Hb_166700_010--Hb_103000_010 Hb_166700_010--Hb_179367_010 Hb_166700_010--Hb_104362_020 Hb_166700_010--Hb_004652_040 Hb_000696_120 Hb_000696_120 Hb_174829_030--Hb_000696_120 Hb_003216_010 Hb_003216_010 Hb_174829_030--Hb_003216_010 Hb_010080_040 Hb_010080_040 Hb_174829_030--Hb_010080_040 Hb_001006_080 Hb_001006_080 Hb_174829_030--Hb_001006_080 Hb_003540_010 Hb_003540_010 Hb_174829_030--Hb_003540_010 Hb_004652_040--Hb_002014_120 Hb_004652_040--Hb_103000_010 Hb_003337_010 Hb_003337_010 Hb_004652_040--Hb_003337_010 Hb_009838_030 Hb_009838_030 Hb_004652_040--Hb_009838_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135706 0.141523 0.833617 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis