Hb_151094_020

Information

Type -
Description -
Location Contig151094: 4969-5799
Sequence    

Annotation

kegg
ID pmum:103319932
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_008219743.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID M5XRY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024924mg PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151094_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
2 Hb_147060_010 0.0504873264 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
3 Hb_010812_130 0.0524223798 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
4 Hb_001006_050 0.0529504945 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
5 Hb_000438_030 0.0533591552 - - -
6 Hb_135673_010 0.0697537454 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
7 Hb_103452_010 0.0707839098 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_046615_040 0.0741110258 - - unnamed protein product [Vitis vinifera]
9 Hb_004116_090 0.0824408789 - - -
10 Hb_005356_030 0.082904791 - - protein binding protein, putative [Ricinus communis]
11 Hb_003010_050 0.089824428 - - -
12 Hb_002498_290 0.1039360662 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
13 Hb_005306_060 0.1174125707 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
14 Hb_030736_030 0.1203987181 - - hypothetical protein VITISV_006651 [Vitis vinifera]
15 Hb_000679_280 0.1263564476 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
16 Hb_001862_160 0.1336564408 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
17 Hb_003858_050 0.1422704174 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
18 Hb_002759_200 0.1434981285 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
19 Hb_000979_070 0.1442909445 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
20 Hb_003549_010 0.1460696755 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]

Gene co-expression network

sample Hb_151094_020 Hb_151094_020 Hb_147060_010 Hb_147060_010 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_001006_050 Hb_001006_050 Hb_151094_020--Hb_001006_050 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_135673_010 Hb_135673_010 Hb_151094_020--Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_151094_020--Hb_103452_010 Hb_147060_010--Hb_010812_130 Hb_147060_010--Hb_000438_030 Hb_046615_040 Hb_046615_040 Hb_147060_010--Hb_046615_040 Hb_003010_050 Hb_003010_050 Hb_147060_010--Hb_003010_050 Hb_005306_060 Hb_005306_060 Hb_147060_010--Hb_005306_060 Hb_010812_130--Hb_000438_030 Hb_010812_130--Hb_046615_040 Hb_010812_130--Hb_003010_050 Hb_010812_130--Hb_005306_060 Hb_001006_050--Hb_103452_010 Hb_001006_050--Hb_135673_010 Hb_005356_030 Hb_005356_030 Hb_001006_050--Hb_005356_030 Hb_004116_090 Hb_004116_090 Hb_001006_050--Hb_004116_090 Hb_001006_050--Hb_147060_010 Hb_000438_030--Hb_046615_040 Hb_000438_030--Hb_003010_050 Hb_000438_030--Hb_005306_060 Hb_135673_010--Hb_103452_010 Hb_135673_010--Hb_005356_030 Hb_135673_010--Hb_004116_090 Hb_002498_290 Hb_002498_290 Hb_135673_010--Hb_002498_290 Hb_103452_010--Hb_005356_030 Hb_103452_010--Hb_004116_090 Hb_000002_150 Hb_000002_150 Hb_103452_010--Hb_000002_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0642518 0.0510497 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0408061 0

CAGE analysis