Hb_151320_010

Information

Type -
Description -
Location Contig151320: 115-729
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151320_010 0.0 - - -
2 Hb_013420_120 0.1533656728 - - -
3 Hb_004195_220 0.1710907618 - - hypothetical protein PRUPE_ppa005288mg [Prunus persica]
4 Hb_000987_110 0.2249521396 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
5 Hb_141425_010 0.2249621374 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
6 Hb_123396_010 0.2249964206 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
7 Hb_005742_010 0.2359950587 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_009268_030 0.2374731943 - - ribosomal protein S7 [Piper cenocladum]
9 Hb_170973_010 0.2375094652 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
10 Hb_171685_020 0.2448402591 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006040_050 0.2537049325 - - conserved hypothetical protein [Ricinus communis]
12 Hb_053079_010 0.2540061187 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_004124_010 0.2555827104 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_004078_030 0.2628648319 - - Putative polyprotein, identical [Solanum demissum]
15 Hb_004019_060 0.2628755726 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_008601_020 0.2628786364 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_004989_010 0.2629042131 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
18 Hb_017184_010 0.2631913398 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
19 Hb_001952_080 0.2632441858 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
20 Hb_039316_010 0.2632703019 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]

Gene co-expression network

sample Hb_151320_010 Hb_151320_010 Hb_013420_120 Hb_013420_120 Hb_151320_010--Hb_013420_120 Hb_004195_220 Hb_004195_220 Hb_151320_010--Hb_004195_220 Hb_000987_110 Hb_000987_110 Hb_151320_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_151320_010--Hb_141425_010 Hb_123396_010 Hb_123396_010 Hb_151320_010--Hb_123396_010 Hb_005742_010 Hb_005742_010 Hb_151320_010--Hb_005742_010 Hb_171685_020 Hb_171685_020 Hb_013420_120--Hb_171685_020 Hb_013420_010 Hb_013420_010 Hb_013420_120--Hb_013420_010 Hb_006040_050 Hb_006040_050 Hb_013420_120--Hb_006040_050 Hb_171685_040 Hb_171685_040 Hb_013420_120--Hb_171685_040 Hb_027357_010 Hb_027357_010 Hb_013420_120--Hb_027357_010 Hb_132384_010 Hb_132384_010 Hb_004195_220--Hb_132384_010 Hb_000172_130 Hb_000172_130 Hb_004195_220--Hb_000172_130 Hb_053079_010 Hb_053079_010 Hb_004195_220--Hb_053079_010 Hb_170156_010 Hb_170156_010 Hb_004195_220--Hb_170156_010 Hb_007790_040 Hb_007790_040 Hb_004195_220--Hb_007790_040 Hb_000987_110--Hb_141425_010 Hb_000987_110--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_000987_110--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_000987_110--Hb_170973_010 Hb_004124_010 Hb_004124_010 Hb_000987_110--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_000987_110--Hb_004078_030 Hb_141425_010--Hb_123396_010 Hb_141425_010--Hb_009268_030 Hb_141425_010--Hb_170973_010 Hb_141425_010--Hb_004124_010 Hb_141425_010--Hb_004078_030 Hb_123396_010--Hb_009268_030 Hb_123396_010--Hb_170973_010 Hb_123396_010--Hb_004124_010 Hb_123396_010--Hb_004078_030 Hb_005742_010--Hb_006040_050 Hb_005742_010--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_005742_010--Hb_171685_030 Hb_002482_050 Hb_002482_050 Hb_005742_010--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_005742_010--Hb_062192_060 Hb_000245_120 Hb_000245_120 Hb_005742_010--Hb_000245_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0760147 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.219586 0 0.483289

CAGE analysis