Hb_151436_010

Information

Type -
Description -
Location Contig151436: 616-966
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22050g
description hypothetical protein
nr
ID XP_011040880.1
description PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GGS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1
Gene Ontology
ID GO:0031225
description PREDICTED: uncharacterized protein LOC105137019

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151436_010 0.0 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
2 Hb_006970_180 0.0253851344 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
3 Hb_000431_050 0.0441278266 - - conserved hypothetical protein [Ricinus communis]
4 Hb_085158_010 0.0442691842 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_002073_210 0.0477768956 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022250_140 0.0636986638 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_006603_010 0.0698049268 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
8 Hb_006889_010 0.0699224245 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
9 Hb_006570_170 0.0717905099 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
10 Hb_003152_010 0.0733535606 - - -
11 Hb_000331_380 0.0758751398 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
12 Hb_000352_210 0.078243256 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
13 Hb_006846_050 0.0784820256 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_001634_050 0.0790848974 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
15 Hb_025557_090 0.0907997814 - - hypothetical protein glysoja_034865 [Glycine soja]
16 Hb_005539_330 0.091192371 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
17 Hb_004732_080 0.0916239752 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
18 Hb_006816_060 0.0939385052 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
19 Hb_015183_090 0.0986253835 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
20 Hb_004884_050 0.0994293815 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]

Gene co-expression network

sample Hb_151436_010 Hb_151436_010 Hb_006970_180 Hb_006970_180 Hb_151436_010--Hb_006970_180 Hb_000431_050 Hb_000431_050 Hb_151436_010--Hb_000431_050 Hb_085158_010 Hb_085158_010 Hb_151436_010--Hb_085158_010 Hb_002073_210 Hb_002073_210 Hb_151436_010--Hb_002073_210 Hb_022250_140 Hb_022250_140 Hb_151436_010--Hb_022250_140 Hb_006603_010 Hb_006603_010 Hb_151436_010--Hb_006603_010 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_085158_010 Hb_006970_180--Hb_000431_050 Hb_006970_180--Hb_006603_010 Hb_006970_180--Hb_002073_210 Hb_000431_050--Hb_085158_010 Hb_000331_380 Hb_000331_380 Hb_000431_050--Hb_000331_380 Hb_000431_050--Hb_002073_210 Hb_000352_210 Hb_000352_210 Hb_000431_050--Hb_000352_210 Hb_006846_050 Hb_006846_050 Hb_085158_010--Hb_006846_050 Hb_085158_010--Hb_006603_010 Hb_006889_010 Hb_006889_010 Hb_085158_010--Hb_006889_010 Hb_002073_210--Hb_000331_380 Hb_002073_210--Hb_022250_140 Hb_002073_210--Hb_000352_210 Hb_006570_170 Hb_006570_170 Hb_022250_140--Hb_006570_170 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_022250_140--Hb_001634_050 Hb_006603_010--Hb_006846_050 Hb_006618_060 Hb_006618_060 Hb_006603_010--Hb_006618_060 Hb_006603_010--Hb_006889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.0654 17.6982 246.097 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 13.651

CAGE analysis