Hb_151463_010

Information

Type -
Description -
Location Contig151463: 220-447
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G173500g
description hypothetical protein
nr
ID KJB21779.1
description hypothetical protein B456_004G013100 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QPW2
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G013100 PE=4 SV=1
Gene Ontology
ID GO:0005784
description protein transport protein sec61 subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151463_010 0.0 - - hypothetical protein B456_004G013100 [Gossypium raimondii]
2 Hb_003073_170 0.1794920058 - - -
3 Hb_054885_010 0.2109564299 - - -
4 Hb_003157_030 0.2214365518 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
5 Hb_001351_080 0.2287657404 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
6 Hb_003376_070 0.2300873088 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
7 Hb_000133_070 0.2351223494 - - -
8 Hb_005333_190 0.2408586759 - - PREDICTED: AP-4 complex subunit mu isoform X2 [Populus euphratica]
9 Hb_000086_100 0.2415171196 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
10 Hb_030328_010 0.2417893742 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
11 Hb_054586_020 0.2490445191 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
12 Hb_002035_080 0.2509511911 - - unnamed protein product [Vitis vinifera]
13 Hb_000571_150 0.2540511289 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
14 Hb_015026_060 0.254111486 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
15 Hb_000886_060 0.2551617621 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
16 Hb_081517_010 0.2583296772 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
17 Hb_059641_010 0.2583863899 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
18 Hb_001102_260 0.259921709 - - hypothetical protein L484_019841 [Morus notabilis]
19 Hb_027420_050 0.2623141347 - - -
20 Hb_169329_010 0.2637173587 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_151463_010 Hb_151463_010 Hb_003073_170 Hb_003073_170 Hb_151463_010--Hb_003073_170 Hb_054885_010 Hb_054885_010 Hb_151463_010--Hb_054885_010 Hb_003157_030 Hb_003157_030 Hb_151463_010--Hb_003157_030 Hb_001351_080 Hb_001351_080 Hb_151463_010--Hb_001351_080 Hb_003376_070 Hb_003376_070 Hb_151463_010--Hb_003376_070 Hb_000133_070 Hb_000133_070 Hb_151463_010--Hb_000133_070 Hb_003107_020 Hb_003107_020 Hb_003073_170--Hb_003107_020 Hb_007785_010 Hb_007785_010 Hb_003073_170--Hb_007785_010 Hb_000853_030 Hb_000853_030 Hb_003073_170--Hb_000853_030 Hb_054885_020 Hb_054885_020 Hb_003073_170--Hb_054885_020 Hb_001989_020 Hb_001989_020 Hb_003073_170--Hb_001989_020 Hb_142751_010 Hb_142751_010 Hb_054885_010--Hb_142751_010 Hb_000886_060 Hb_000886_060 Hb_054885_010--Hb_000886_060 Hb_011953_030 Hb_011953_030 Hb_054885_010--Hb_011953_030 Hb_054885_010--Hb_003376_070 Hb_000056_230 Hb_000056_230 Hb_054885_010--Hb_000056_230 Hb_000329_420 Hb_000329_420 Hb_054885_010--Hb_000329_420 Hb_006501_020 Hb_006501_020 Hb_003157_030--Hb_006501_020 Hb_002815_060 Hb_002815_060 Hb_003157_030--Hb_002815_060 Hb_002742_070 Hb_002742_070 Hb_003157_030--Hb_002742_070 Hb_031069_020 Hb_031069_020 Hb_003157_030--Hb_031069_020 Hb_003157_030--Hb_003376_070 Hb_141547_010 Hb_141547_010 Hb_003157_030--Hb_141547_010 Hb_000086_100 Hb_000086_100 Hb_001351_080--Hb_000086_100 Hb_001691_150 Hb_001691_150 Hb_001351_080--Hb_001691_150 Hb_000525_010 Hb_000525_010 Hb_001351_080--Hb_000525_010 Hb_000665_010 Hb_000665_010 Hb_001351_080--Hb_000665_010 Hb_000418_070 Hb_000418_070 Hb_001351_080--Hb_000418_070 Hb_012753_130 Hb_012753_130 Hb_001351_080--Hb_012753_130 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_002411_130 Hb_002411_130 Hb_003376_070--Hb_002411_130 Hb_009119_030 Hb_009119_030 Hb_003376_070--Hb_009119_030 Hb_003376_070--Hb_002742_070 Hb_130134_030 Hb_130134_030 Hb_003376_070--Hb_130134_030 Hb_008778_010 Hb_008778_010 Hb_000133_070--Hb_008778_010 Hb_131035_010 Hb_131035_010 Hb_000133_070--Hb_131035_010 Hb_000334_180 Hb_000334_180 Hb_000133_070--Hb_000334_180 Hb_002947_020 Hb_002947_020 Hb_000133_070--Hb_002947_020 Hb_001767_130 Hb_001767_130 Hb_000133_070--Hb_001767_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03426 6.89312 0.427477 9.61587 7.12567 13.4496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856525 0 4.06947 3.54028 0

CAGE analysis