Hb_151616_010

Information

Type -
Description -
Location Contig151616: 5612-8623
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151616_010 0.0 - - -
2 Hb_000286_210 0.0455549641 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
3 Hb_001059_050 0.0544242478 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
4 Hb_002639_120 0.0867060053 - - unnamed protein product [Vitis vinifera]
5 Hb_002422_010 0.0881075592 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
6 Hb_132517_010 0.0952628926 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
7 Hb_003012_010 0.0984158448 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001227_010 0.1030649732 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
9 Hb_021443_020 0.1041901867 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
10 Hb_005396_110 0.1159112911 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001213_080 0.1294377163 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
12 Hb_005389_090 0.1297912975 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
13 Hb_006890_050 0.1305825783 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
14 Hb_002025_120 0.1342662691 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
15 Hb_007313_050 0.1366610027 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_035006_010 0.1379556545 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
17 Hb_001610_050 0.1509486639 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
18 Hb_161954_010 0.1528588786 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
19 Hb_000702_040 0.1545472 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_004007_190 0.1548484993 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_151616_010 Hb_151616_010 Hb_000286_210 Hb_000286_210 Hb_151616_010--Hb_000286_210 Hb_001059_050 Hb_001059_050 Hb_151616_010--Hb_001059_050 Hb_002639_120 Hb_002639_120 Hb_151616_010--Hb_002639_120 Hb_002422_010 Hb_002422_010 Hb_151616_010--Hb_002422_010 Hb_132517_010 Hb_132517_010 Hb_151616_010--Hb_132517_010 Hb_003012_010 Hb_003012_010 Hb_151616_010--Hb_003012_010 Hb_000286_210--Hb_001059_050 Hb_021443_020 Hb_021443_020 Hb_000286_210--Hb_021443_020 Hb_000286_210--Hb_003012_010 Hb_001213_080 Hb_001213_080 Hb_000286_210--Hb_001213_080 Hb_000286_210--Hb_002639_120 Hb_001059_050--Hb_021443_020 Hb_001059_050--Hb_132517_010 Hb_001059_050--Hb_001213_080 Hb_007313_050 Hb_007313_050 Hb_001059_050--Hb_007313_050 Hb_006890_050 Hb_006890_050 Hb_002639_120--Hb_006890_050 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_001227_010 Hb_001227_010 Hb_002639_120--Hb_001227_010 Hb_000702_040 Hb_000702_040 Hb_002639_120--Hb_000702_040 Hb_002422_010--Hb_003012_010 Hb_000167_090 Hb_000167_090 Hb_002422_010--Hb_000167_090 Hb_002422_010--Hb_000286_210 Hb_001808_010 Hb_001808_010 Hb_002422_010--Hb_001808_010 Hb_039410_010 Hb_039410_010 Hb_002422_010--Hb_039410_010 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_005396_110 Hb_005396_110 Hb_132517_010--Hb_005396_110 Hb_001897_030 Hb_001897_030 Hb_132517_010--Hb_001897_030 Hb_132517_010--Hb_001227_010 Hb_003012_010--Hb_001808_010 Hb_003012_010--Hb_002639_120 Hb_001318_180 Hb_001318_180 Hb_003012_010--Hb_001318_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.181901 0.0185386 0.187184 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0179657 0

CAGE analysis