Hb_151628_010

Information

Type -
Description -
Location Contig151628: 1-852
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_012074440.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0009507
description choline chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151628_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000326_030 0.2175598194 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
3 Hb_002735_040 0.2369872835 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
4 Hb_000392_100 0.2378285859 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
5 Hb_001749_010 0.2510903406 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
6 Hb_008707_030 0.2605887316 - - PREDICTED: uncharacterized protein LOC104447982 [Eucalyptus grandis]
7 Hb_000347_500 0.2635091712 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
8 Hb_067466_010 0.2674290138 - - ankyrin repeat protein [Bruguiera gymnorhiza]
9 Hb_095471_010 0.2708037293 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
10 Hb_000415_060 0.2708502342 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
11 Hb_021420_010 0.2730186675 - - hypothetical protein CICLE_v10029508mg [Citrus clementina]
12 Hb_026206_020 0.2744133508 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
13 Hb_129067_010 0.2772083349 - - Cytochrome P450 superfamily protein [Theobroma cacao]
14 Hb_000098_020 0.2813680024 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
15 Hb_000270_560 0.2888292504 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
16 Hb_000317_330 0.2906742662 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
17 Hb_002804_050 0.2921898704 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
18 Hb_129722_010 0.2947888811 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
19 Hb_001606_080 0.2967631122 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
20 Hb_096346_010 0.2971260145 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_151628_010 Hb_151628_010 Hb_000326_030 Hb_000326_030 Hb_151628_010--Hb_000326_030 Hb_002735_040 Hb_002735_040 Hb_151628_010--Hb_002735_040 Hb_000392_100 Hb_000392_100 Hb_151628_010--Hb_000392_100 Hb_001749_010 Hb_001749_010 Hb_151628_010--Hb_001749_010 Hb_008707_030 Hb_008707_030 Hb_151628_010--Hb_008707_030 Hb_000347_500 Hb_000347_500 Hb_151628_010--Hb_000347_500 Hb_000326_030--Hb_000347_500 Hb_000415_060 Hb_000415_060 Hb_000326_030--Hb_000415_060 Hb_000326_030--Hb_001749_010 Hb_001606_080 Hb_001606_080 Hb_000326_030--Hb_001606_080 Hb_129722_010 Hb_129722_010 Hb_000326_030--Hb_129722_010 Hb_105085_010 Hb_105085_010 Hb_002735_040--Hb_105085_010 Hb_002804_050 Hb_002804_050 Hb_002735_040--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002735_040--Hb_006615_100 Hb_002843_050 Hb_002843_050 Hb_002735_040--Hb_002843_050 Hb_005122_060 Hb_005122_060 Hb_002735_040--Hb_005122_060 Hb_012384_050 Hb_012384_050 Hb_002735_040--Hb_012384_050 Hb_015401_030 Hb_015401_030 Hb_000392_100--Hb_015401_030 Hb_002248_140 Hb_002248_140 Hb_000392_100--Hb_002248_140 Hb_000139_240 Hb_000139_240 Hb_000392_100--Hb_000139_240 Hb_002493_100 Hb_002493_100 Hb_000392_100--Hb_002493_100 Hb_002270_010 Hb_002270_010 Hb_000392_100--Hb_002270_010 Hb_000186_040 Hb_000186_040 Hb_000392_100--Hb_000186_040 Hb_001749_010--Hb_129722_010 Hb_001749_010--Hb_001606_080 Hb_001749_010--Hb_002735_040 Hb_001749_010--Hb_000347_500 Hb_001749_010--Hb_000415_060 Hb_095471_010 Hb_095471_010 Hb_008707_030--Hb_095471_010 Hb_129067_010 Hb_129067_010 Hb_008707_030--Hb_129067_010 Hb_088542_010 Hb_088542_010 Hb_008707_030--Hb_088542_010 Hb_123104_010 Hb_123104_010 Hb_008707_030--Hb_123104_010 Hb_143397_010 Hb_143397_010 Hb_008707_030--Hb_143397_010 Hb_000347_500--Hb_000415_060 Hb_006698_050 Hb_006698_050 Hb_000347_500--Hb_006698_050 Hb_000939_010 Hb_000939_010 Hb_000347_500--Hb_000939_010 Hb_000270_560 Hb_000270_560 Hb_000347_500--Hb_000270_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.614926 0.154213 0.0492797 0.0803629 0.0603273 0.161284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.110135 0.185548 0.137706 0

CAGE analysis