Hb_151706_010

Information

Type -
Description -
Location Contig151706: 348-1043
Sequence    

Annotation

kegg
ID vvi:100246093
description uncharacterized LOC100246093
nr
ID XP_010660145.1
description PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5GAL4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s042901g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151706_010 0.0 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
2 Hb_002119_070 0.1542329379 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_004316_030 0.1651606219 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
4 Hb_053125_010 0.1669437132 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
5 Hb_117168_010 0.1676476568 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_136880_010 0.1809168648 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_000977_010 0.1856505698 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
8 Hb_057079_020 0.1857300765 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010605_010 0.1873931774 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
10 Hb_001373_010 0.1910764438 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_000313_370 0.1918316499 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001408_150 0.1957747319 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_000778_020 0.1973308875 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_086336_010 0.19789974 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
15 Hb_007618_010 0.1982967516 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
16 Hb_001091_020 0.1998746537 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_000233_100 0.200138466 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_117840_010 0.2010374418 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000197_230 0.2014971776 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_002928_120 0.2030441005 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]

Gene co-expression network

sample Hb_151706_010 Hb_151706_010 Hb_002119_070 Hb_002119_070 Hb_151706_010--Hb_002119_070 Hb_004316_030 Hb_004316_030 Hb_151706_010--Hb_004316_030 Hb_053125_010 Hb_053125_010 Hb_151706_010--Hb_053125_010 Hb_117168_010 Hb_117168_010 Hb_151706_010--Hb_117168_010 Hb_136880_010 Hb_136880_010 Hb_151706_010--Hb_136880_010 Hb_000977_010 Hb_000977_010 Hb_151706_010--Hb_000977_010 Hb_010605_010 Hb_010605_010 Hb_002119_070--Hb_010605_010 Hb_004531_110 Hb_004531_110 Hb_002119_070--Hb_004531_110 Hb_000362_050 Hb_000362_050 Hb_002119_070--Hb_000362_050 Hb_002928_120 Hb_002928_120 Hb_002119_070--Hb_002928_120 Hb_001071_060 Hb_001071_060 Hb_002119_070--Hb_001071_060 Hb_029977_010 Hb_029977_010 Hb_004316_030--Hb_029977_010 Hb_001021_030 Hb_001021_030 Hb_004316_030--Hb_001021_030 Hb_000762_070 Hb_000762_070 Hb_004316_030--Hb_000762_070 Hb_000793_040 Hb_000793_040 Hb_004316_030--Hb_000793_040 Hb_004316_030--Hb_002928_120 Hb_004316_030--Hb_002119_070 Hb_001485_010 Hb_001485_010 Hb_053125_010--Hb_001485_010 Hb_102011_010 Hb_102011_010 Hb_053125_010--Hb_102011_010 Hb_167977_010 Hb_167977_010 Hb_053125_010--Hb_167977_010 Hb_147218_010 Hb_147218_010 Hb_053125_010--Hb_147218_010 Hb_065500_010 Hb_065500_010 Hb_053125_010--Hb_065500_010 Hb_002551_090 Hb_002551_090 Hb_117168_010--Hb_002551_090 Hb_001373_010 Hb_001373_010 Hb_117168_010--Hb_001373_010 Hb_003576_050 Hb_003576_050 Hb_117168_010--Hb_003576_050 Hb_001091_020 Hb_001091_020 Hb_117168_010--Hb_001091_020 Hb_000086_370 Hb_000086_370 Hb_117168_010--Hb_000086_370 Hb_006241_010 Hb_006241_010 Hb_117168_010--Hb_006241_010 Hb_121992_010 Hb_121992_010 Hb_136880_010--Hb_121992_010 Hb_136880_010--Hb_001485_010 Hb_012788_010 Hb_012788_010 Hb_136880_010--Hb_012788_010 Hb_001304_130 Hb_001304_130 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_000313_370 Hb_000313_370 Hb_000977_010--Hb_000313_370 Hb_002903_130 Hb_002903_130 Hb_000977_010--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_000977_010--Hb_000362_110 Hb_001351_040 Hb_001351_040 Hb_000977_010--Hb_001351_040 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0353089 1.84211 0.248585 1.25006 0.246084 0.655699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.114323 2.27001 0.760251

CAGE analysis