Hb_151870_010

Information

Type -
Description -
Location Contig151870: 3101-3697
Sequence    

Annotation

kegg
ID rcu:RCOM_0852690
description Metalloendoproteinase 1 precursor, putative (EC:3.4.24.7)
nr
ID XP_002517411.1
description Metalloendoproteinase 1 precursor, putative [Ricinus communis]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9RUG6
description Metalloendoproteinase 1, putative OS=Ricinus communis GN=RCOM_0852690 PE=4 SV=1
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12927: 3206-3424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151870_010 0.0 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
2 Hb_002631_270 0.0769175297 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
3 Hb_006807_010 0.1051686494 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
4 Hb_155423_010 0.1108127654 - - -
5 Hb_017225_030 0.1187149374 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
6 Hb_009851_090 0.1191452481 - - Protein ABIL2, putative [Ricinus communis]
7 Hb_102761_010 0.1274914611 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
8 Hb_029727_010 0.1294561021 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000169_100 0.1325281515 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
10 Hb_000644_020 0.1367331056 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_032016_010 0.1446940312 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
12 Hb_040245_010 0.1449424653 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
13 Hb_000567_270 0.1477283803 - - hypothetical protein L484_017162 [Morus notabilis]
14 Hb_001109_170 0.1491786107 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
15 Hb_003073_030 0.1506965782 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000415_080 0.1510640435 - - -
17 Hb_014510_030 0.1522045641 - - hypothetical protein VITISV_027576 [Vitis vinifera]
18 Hb_094484_010 0.1528535729 - - kinase, putative [Ricinus communis]
19 Hb_001248_140 0.1551308727 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_004530_010 0.1564014625 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_151870_010 Hb_151870_010 Hb_002631_270 Hb_002631_270 Hb_151870_010--Hb_002631_270 Hb_006807_010 Hb_006807_010 Hb_151870_010--Hb_006807_010 Hb_155423_010 Hb_155423_010 Hb_151870_010--Hb_155423_010 Hb_017225_030 Hb_017225_030 Hb_151870_010--Hb_017225_030 Hb_009851_090 Hb_009851_090 Hb_151870_010--Hb_009851_090 Hb_102761_010 Hb_102761_010 Hb_151870_010--Hb_102761_010 Hb_002631_270--Hb_155423_010 Hb_002631_270--Hb_017225_030 Hb_002631_270--Hb_009851_090 Hb_002631_270--Hb_006807_010 Hb_029727_010 Hb_029727_010 Hb_002631_270--Hb_029727_010 Hb_000169_100 Hb_000169_100 Hb_006807_010--Hb_000169_100 Hb_006807_010--Hb_155423_010 Hb_006807_010--Hb_017225_030 Hb_006807_010--Hb_029727_010 Hb_003994_070 Hb_003994_070 Hb_155423_010--Hb_003994_070 Hb_155423_010--Hb_009851_090 Hb_002447_100 Hb_002447_100 Hb_155423_010--Hb_002447_100 Hb_000567_270 Hb_000567_270 Hb_155423_010--Hb_000567_270 Hb_008834_010 Hb_008834_010 Hb_017225_030--Hb_008834_010 Hb_000260_730 Hb_000260_730 Hb_017225_030--Hb_000260_730 Hb_017225_030--Hb_029727_010 Hb_017225_030--Hb_000169_100 Hb_032016_010 Hb_032016_010 Hb_009851_090--Hb_032016_010 Hb_009851_090--Hb_003994_070 Hb_003311_020 Hb_003311_020 Hb_009851_090--Hb_003311_020 Hb_009851_090--Hb_000567_270 Hb_004530_010 Hb_004530_010 Hb_102761_010--Hb_004530_010 Hb_014510_030 Hb_014510_030 Hb_102761_010--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_102761_010--Hb_000415_080 Hb_004896_030 Hb_004896_030 Hb_102761_010--Hb_004896_030 Hb_010721_040 Hb_010721_040 Hb_102761_010--Hb_010721_040 Hb_000627_110 Hb_000627_110 Hb_102761_010--Hb_000627_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.45187 5.55176 24.1818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0799519 0 26.7958 88.741

CAGE analysis