Hb_151930_020

Information

Type -
Description -
Location Contig151930: 6984-11558
Sequence    

Annotation

kegg
ID rcu:RCOM_0484440
description Wound-induced protein WIN1 precursor, putative
nr
ID XP_002531285.1
description Wound-induced protein WIN1 precursor, putative [Ricinus communis]
swissprot
ID P09761
description Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1
trembl
ID B9SZ66
description Wound-induced protein WIN1, putative OS=Ricinus communis GN=RCOM_0484440 PE=4 SV=1
Gene Ontology
ID GO:0042742
description wound-induced protein win1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12941: 6971-7597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151930_020 0.0 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
2 Hb_001616_020 0.1163290928 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
3 Hb_007477_090 0.132200597 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
4 Hb_007441_180 0.1364111545 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001821_120 0.1406353078 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
6 Hb_000580_160 0.1453002934 - - Nitrate transporter 1.5 [Morus notabilis]
7 Hb_011310_060 0.1455599082 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
8 Hb_004055_060 0.1485471134 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
9 Hb_001621_180 0.1559209382 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
10 Hb_150299_030 0.1560610955 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000777_060 0.1569183685 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002234_210 0.1604839021 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
13 Hb_000853_360 0.161268427 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
14 Hb_005276_100 0.1617010596 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
15 Hb_009252_130 0.165852284 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
16 Hb_002293_030 0.1673764059 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
17 Hb_006132_050 0.1689975689 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
18 Hb_008557_020 0.1711825276 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
19 Hb_004958_050 0.1711850282 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
20 Hb_011689_050 0.1718334628 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]

Gene co-expression network

sample Hb_151930_020 Hb_151930_020 Hb_001616_020 Hb_001616_020 Hb_151930_020--Hb_001616_020 Hb_007477_090 Hb_007477_090 Hb_151930_020--Hb_007477_090 Hb_007441_180 Hb_007441_180 Hb_151930_020--Hb_007441_180 Hb_001821_120 Hb_001821_120 Hb_151930_020--Hb_001821_120 Hb_000580_160 Hb_000580_160 Hb_151930_020--Hb_000580_160 Hb_011310_060 Hb_011310_060 Hb_151930_020--Hb_011310_060 Hb_009252_130 Hb_009252_130 Hb_001616_020--Hb_009252_130 Hb_011689_050 Hb_011689_050 Hb_001616_020--Hb_011689_050 Hb_004958_050 Hb_004958_050 Hb_001616_020--Hb_004958_050 Hb_002234_210 Hb_002234_210 Hb_001616_020--Hb_002234_210 Hb_000144_110 Hb_000144_110 Hb_001616_020--Hb_000144_110 Hb_000777_060 Hb_000777_060 Hb_007477_090--Hb_000777_060 Hb_004055_060 Hb_004055_060 Hb_007477_090--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_007477_090--Hb_001279_250 Hb_010362_020 Hb_010362_020 Hb_007477_090--Hb_010362_020 Hb_000853_360 Hb_000853_360 Hb_007477_090--Hb_000853_360 Hb_001621_180 Hb_001621_180 Hb_007441_180--Hb_001621_180 Hb_001104_120 Hb_001104_120 Hb_007441_180--Hb_001104_120 Hb_000563_590 Hb_000563_590 Hb_007441_180--Hb_000563_590 Hb_007441_180--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_007441_180--Hb_000190_060 Hb_007441_180--Hb_002234_210 Hb_003029_080 Hb_003029_080 Hb_001821_120--Hb_003029_080 Hb_001821_120--Hb_002234_210 Hb_001821_120--Hb_000190_060 Hb_002293_030 Hb_002293_030 Hb_001821_120--Hb_002293_030 Hb_001821_120--Hb_007441_180 Hb_001821_120--Hb_011310_060 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_003023_050 Hb_003023_050 Hb_000580_160--Hb_003023_050 Hb_006469_060 Hb_006469_060 Hb_000580_160--Hb_006469_060 Hb_012779_110 Hb_012779_110 Hb_000580_160--Hb_012779_110 Hb_000580_160--Hb_004055_060 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_011310_060--Hb_002293_030 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_011310_060--Hb_009252_130 Hb_011310_060--Hb_000190_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19404 0.0895585 0.101901 0.0290916 1.45624 1.03661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22251 5.06119 0.539883 0.171321 0.119727

CAGE analysis