Hb_151939_010

Information

Type -
Description -
Location Contig151939: 44-486
Sequence    

Annotation

kegg
ID rcu:RCOM_0742410
description nucleic acid binding protein, putative (EC:3.1.2.15)
nr
ID XP_012077137.1
description PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
swissprot
ID Q96I24
description Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2
trembl
ID A0A067LLH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17222 PE=4 SV=1
Gene Ontology
ID GO:0003723
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151939_010 0.0 - - PREDICTED: far upstream element-binding protein 2 isoform X3 [Jatropha curcas]
2 Hb_143800_010 0.2317932847 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
3 Hb_063480_010 0.2444366022 - - PREDICTED: endoribonuclease Dicer homolog 1-like isoform X2 [Pyrus x bretschneideri]
4 Hb_002291_040 0.25339409 - - hypothetical protein VITISV_030841 [Vitis vinifera]
5 Hb_003925_030 0.2760528597 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005542_090 0.2781047527 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
7 Hb_088428_010 0.2798061054 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
8 Hb_001767_120 0.284248917 - - -
9 Hb_019053_010 0.2846507838 - - -
10 Hb_121467_010 0.2850731284 - - tubulin-specific chaperone E, putative [Ricinus communis]
11 Hb_000136_180 0.2855046711 - - ribosomal protein S28, putative [Ricinus communis]
12 Hb_041025_010 0.2906894611 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
13 Hb_070385_010 0.2925178364 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
14 Hb_001623_290 0.2951461808 - - unknown [Populus trichocarpa]
15 Hb_003266_040 0.296673792 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
16 Hb_004243_010 0.298493949 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
17 Hb_000136_130 0.3003381891 - - PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
18 Hb_002391_090 0.3003912063 - - PREDICTED: IST1-like protein [Jatropha curcas]
19 Hb_179812_010 0.3028596722 - - TdcA1-ORF1-ORF2 [Daucus carota]
20 Hb_178620_010 0.3050216827 - - ADP-ribosylation factor, arf, putative [Ricinus communis]

Gene co-expression network

sample Hb_151939_010 Hb_151939_010 Hb_143800_010 Hb_143800_010 Hb_151939_010--Hb_143800_010 Hb_063480_010 Hb_063480_010 Hb_151939_010--Hb_063480_010 Hb_002291_040 Hb_002291_040 Hb_151939_010--Hb_002291_040 Hb_003925_030 Hb_003925_030 Hb_151939_010--Hb_003925_030 Hb_005542_090 Hb_005542_090 Hb_151939_010--Hb_005542_090 Hb_088428_010 Hb_088428_010 Hb_151939_010--Hb_088428_010 Hb_143800_010--Hb_063480_010 Hb_000415_070 Hb_000415_070 Hb_143800_010--Hb_000415_070 Hb_000640_110 Hb_000640_110 Hb_143800_010--Hb_000640_110 Hb_000136_180 Hb_000136_180 Hb_143800_010--Hb_000136_180 Hb_143800_010--Hb_005542_090 Hb_025048_020 Hb_025048_020 Hb_063480_010--Hb_025048_020 Hb_094437_010 Hb_094437_010 Hb_063480_010--Hb_094437_010 Hb_063480_010--Hb_000136_180 Hb_063480_010--Hb_000415_070 Hb_001385_080 Hb_001385_080 Hb_002291_040--Hb_001385_080 Hb_001300_050 Hb_001300_050 Hb_002291_040--Hb_001300_050 Hb_079993_010 Hb_079993_010 Hb_002291_040--Hb_079993_010 Hb_005928_070 Hb_005928_070 Hb_002291_040--Hb_005928_070 Hb_001231_070 Hb_001231_070 Hb_002291_040--Hb_001231_070 Hb_131967_010 Hb_131967_010 Hb_003925_030--Hb_131967_010 Hb_006769_010 Hb_006769_010 Hb_003925_030--Hb_006769_010 Hb_000023_160 Hb_000023_160 Hb_003925_030--Hb_000023_160 Hb_000029_100 Hb_000029_100 Hb_003925_030--Hb_000029_100 Hb_002148_020 Hb_002148_020 Hb_003925_030--Hb_002148_020 Hb_003925_030--Hb_000415_070 Hb_179812_010 Hb_179812_010 Hb_005542_090--Hb_179812_010 Hb_007083_020 Hb_007083_020 Hb_005542_090--Hb_007083_020 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460 Hb_121467_010 Hb_121467_010 Hb_088428_010--Hb_121467_010 Hb_142751_010 Hb_142751_010 Hb_088428_010--Hb_142751_010 Hb_178041_010 Hb_178041_010 Hb_088428_010--Hb_178041_010 Hb_130134_030 Hb_130134_030 Hb_088428_010--Hb_130134_030 Hb_009119_030 Hb_009119_030 Hb_088428_010--Hb_009119_030 Hb_000486_060 Hb_000486_060 Hb_088428_010--Hb_000486_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3538 0 1.31777 3.01165 1.46706 5.95906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.59854 0 1.50126 0

CAGE analysis