Hb_151978_010

Information

Type -
Description -
Location Contig151978: 290-975
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151978_010 0.0 - - -
2 Hb_039635_010 0.148639512 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_000227_030 0.2554793843 - - -
4 Hb_002750_020 0.2597284128 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
5 Hb_002641_110 0.2680549794 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
6 Hb_010803_010 0.2921947888 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_168418_010 0.3381865105 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
8 Hb_010588_010 0.3419692491 - - -
9 Hb_179763_020 0.3552486082 - - -
10 Hb_120112_010 0.3629769586 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_000976_370 0.3629898014 - - beta-glucosidase, putative [Ricinus communis]
12 Hb_008689_020 0.3629968969 - - conserved hypothetical protein [Ricinus communis]
13 Hb_163413_010 0.3714488593 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
14 Hb_036285_010 0.3805436839 - - -
15 Hb_007407_030 0.3867806545 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
16 Hb_127120_010 0.3867806971 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_000976_220 0.3867807233 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
18 Hb_006684_020 0.386917253 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_026113_020 0.387005179 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000173_300 0.3874690001 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]

Gene co-expression network

sample Hb_151978_010 Hb_151978_010 Hb_039635_010 Hb_039635_010 Hb_151978_010--Hb_039635_010 Hb_000227_030 Hb_000227_030 Hb_151978_010--Hb_000227_030 Hb_002750_020 Hb_002750_020 Hb_151978_010--Hb_002750_020 Hb_002641_110 Hb_002641_110 Hb_151978_010--Hb_002641_110 Hb_010803_010 Hb_010803_010 Hb_151978_010--Hb_010803_010 Hb_168418_010 Hb_168418_010 Hb_151978_010--Hb_168418_010 Hb_039635_010--Hb_000227_030 Hb_179763_020 Hb_179763_020 Hb_039635_010--Hb_179763_020 Hb_036285_010 Hb_036285_010 Hb_039635_010--Hb_036285_010 Hb_039635_010--Hb_002750_020 Hb_039635_010--Hb_002641_110 Hb_000227_030--Hb_179763_020 Hb_079993_010 Hb_079993_010 Hb_000227_030--Hb_079993_010 Hb_163413_010 Hb_163413_010 Hb_000227_030--Hb_163413_010 Hb_000227_030--Hb_002641_110 Hb_002750_020--Hb_168418_010 Hb_010098_070 Hb_010098_070 Hb_002750_020--Hb_010098_070 Hb_001053_160 Hb_001053_160 Hb_002750_020--Hb_001053_160 Hb_004223_200 Hb_004223_200 Hb_002750_020--Hb_004223_200 Hb_002641_110--Hb_010803_010 Hb_028271_010 Hb_028271_010 Hb_002641_110--Hb_028271_010 Hb_014556_020 Hb_014556_020 Hb_002641_110--Hb_014556_020 Hb_001377_390 Hb_001377_390 Hb_002641_110--Hb_001377_390 Hb_010803_010--Hb_028271_010 Hb_010803_010--Hb_039635_010 Hb_017214_050 Hb_017214_050 Hb_010803_010--Hb_017214_050 Hb_002027_370 Hb_002027_370 Hb_010803_010--Hb_002027_370 Hb_031862_050 Hb_031862_050 Hb_168418_010--Hb_031862_050 Hb_010588_010 Hb_010588_010 Hb_168418_010--Hb_010588_010 Hb_113733_010 Hb_113733_010 Hb_168418_010--Hb_113733_010 Hb_029162_020 Hb_029162_020 Hb_168418_010--Hb_029162_020 Hb_048610_010 Hb_048610_010 Hb_168418_010--Hb_048610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0451243 0 0 0 0 0.0402444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.082419 0 0 0

CAGE analysis