Hb_152079_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig152079: 9851-13612
Sequence    

Annotation

kegg
ID rcu:RCOM_1077560
description ATP binding protein, putative
nr
ID XP_012085907.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9RM36
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077560 PE=4 SV=1
Gene Ontology
ID GO:0043531
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13074: 11033-11930 , PASA_asmbl_13076: 12619-13530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152079_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
2 Hb_002893_150 0.079220409 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
3 Hb_000531_090 0.0878164918 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
4 Hb_010423_020 0.087835661 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
5 Hb_001575_040 0.0883568771 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
6 Hb_000789_080 0.0911737109 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
7 Hb_000915_050 0.0964250031 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004678_060 0.0966556242 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
9 Hb_000457_060 0.0970266786 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
10 Hb_024990_010 0.0989843677 - - PREDICTED: la protein 1 [Jatropha curcas]
11 Hb_009265_080 0.0998556189 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
12 Hb_000028_610 0.0999109896 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
13 Hb_004449_220 0.1003408861 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
14 Hb_005883_050 0.1011874742 - - PREDICTED: transportin-3 [Jatropha curcas]
15 Hb_024714_020 0.1017726339 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_001484_120 0.1029513955 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
17 Hb_000184_130 0.1031485802 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
18 Hb_004204_020 0.1031599797 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
19 Hb_000436_040 0.1035944103 - - PREDICTED: transportin-1 [Jatropha curcas]
20 Hb_003006_060 0.1045118206 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]

Gene co-expression network

sample Hb_152079_010 Hb_152079_010 Hb_002893_150 Hb_002893_150 Hb_152079_010--Hb_002893_150 Hb_000531_090 Hb_000531_090 Hb_152079_010--Hb_000531_090 Hb_010423_020 Hb_010423_020 Hb_152079_010--Hb_010423_020 Hb_001575_040 Hb_001575_040 Hb_152079_010--Hb_001575_040 Hb_000789_080 Hb_000789_080 Hb_152079_010--Hb_000789_080 Hb_000915_050 Hb_000915_050 Hb_152079_010--Hb_000915_050 Hb_002893_150--Hb_000531_090 Hb_002893_150--Hb_000789_080 Hb_001235_200 Hb_001235_200 Hb_002893_150--Hb_001235_200 Hb_000510_200 Hb_000510_200 Hb_002893_150--Hb_000510_200 Hb_125092_020 Hb_125092_020 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_000531_090--Hb_125092_020 Hb_000531_090--Hb_000789_080 Hb_000035_040 Hb_000035_040 Hb_000531_090--Hb_000035_040 Hb_000343_210 Hb_000343_210 Hb_000531_090--Hb_000343_210 Hb_147737_010 Hb_147737_010 Hb_000531_090--Hb_147737_010 Hb_004195_280 Hb_004195_280 Hb_010423_020--Hb_004195_280 Hb_002174_060 Hb_002174_060 Hb_010423_020--Hb_002174_060 Hb_003006_060 Hb_003006_060 Hb_010423_020--Hb_003006_060 Hb_009265_080 Hb_009265_080 Hb_010423_020--Hb_009265_080 Hb_000364_060 Hb_000364_060 Hb_010423_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_010423_020--Hb_134364_010 Hb_001575_040--Hb_010423_020 Hb_001575_040--Hb_000436_040 Hb_024990_010 Hb_024990_010 Hb_001575_040--Hb_024990_010 Hb_004881_050 Hb_004881_050 Hb_001575_040--Hb_004881_050 Hb_005000_100 Hb_005000_100 Hb_001575_040--Hb_005000_100 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_026099_010 Hb_026099_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_002044_060 Hb_002044_060 Hb_000789_080--Hb_002044_060 Hb_003362_040 Hb_003362_040 Hb_000915_050--Hb_003362_040 Hb_000244_250 Hb_000244_250 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8812 6.69752 6.81732 5.94634 14.5121 30.7012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.135 7.40618 11.6348 9.88128 5.61107

CAGE analysis