Hb_152277_010

Information

Type -
Description -
Location Contig152277: 15787-17571
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40420g
description nine-cis-epoxycarotenoid dioxygenase3 family protein
nr
ID XP_012084339.1
description PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LRR7
description 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1
trembl
ID A0A067JY13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19722 PE=4 SV=1
Gene Ontology
ID GO:0003834
description 9-cis-epoxycarotenoid dioxygenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152277_010 0.0 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
2 Hb_000258_230 0.0897359753 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000983_130 0.090091521 - - transcription factor, putative [Ricinus communis]
4 Hb_004102_200 0.090816488 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_005790_010 0.0918691036 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
6 Hb_007103_020 0.0989559276 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
7 Hb_009771_040 0.114982832 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
8 Hb_000201_010 0.1156627677 - - unnamed protein product [Vitis vinifera]
9 Hb_002168_070 0.1200505637 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
10 Hb_002066_010 0.1239081362 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
11 Hb_000000_260 0.1241548788 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
12 Hb_081864_010 0.1245085594 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_005211_210 0.1262652834 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
14 Hb_001405_170 0.1269983621 - - aspartyl protease family protein [Populus trichocarpa]
15 Hb_002043_070 0.1277078469 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
16 Hb_029238_040 0.1294854959 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_004450_090 0.1314619936 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
18 Hb_002960_030 0.1325255551 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
19 Hb_158189_010 0.1336892158 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_029791_010 0.1354418748 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]

Gene co-expression network

sample Hb_152277_010 Hb_152277_010 Hb_000258_230 Hb_000258_230 Hb_152277_010--Hb_000258_230 Hb_000983_130 Hb_000983_130 Hb_152277_010--Hb_000983_130 Hb_004102_200 Hb_004102_200 Hb_152277_010--Hb_004102_200 Hb_005790_010 Hb_005790_010 Hb_152277_010--Hb_005790_010 Hb_007103_020 Hb_007103_020 Hb_152277_010--Hb_007103_020 Hb_009771_040 Hb_009771_040 Hb_152277_010--Hb_009771_040 Hb_000258_230--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000258_230--Hb_002250_140 Hb_000258_230--Hb_007103_020 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_000983_130--Hb_004102_200 Hb_004450_090 Hb_004450_090 Hb_000983_130--Hb_004450_090 Hb_029238_040 Hb_029238_040 Hb_000983_130--Hb_029238_040 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_000000_260 Hb_000000_260 Hb_000983_130--Hb_000000_260 Hb_004102_200--Hb_029238_040 Hb_004102_200--Hb_004450_090 Hb_061783_010 Hb_061783_010 Hb_004102_200--Hb_061783_010 Hb_156850_050 Hb_156850_050 Hb_004102_200--Hb_156850_050 Hb_005790_010--Hb_000258_230 Hb_001158_250 Hb_001158_250 Hb_005790_010--Hb_001158_250 Hb_005790_010--Hb_007103_020 Hb_000622_030 Hb_000622_030 Hb_005790_010--Hb_000622_030 Hb_001232_040 Hb_001232_040 Hb_005790_010--Hb_001232_040 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_007103_020--Hb_009771_040 Hb_007103_020--Hb_002250_140 Hb_002168_070 Hb_002168_070 Hb_009771_040--Hb_002168_070 Hb_009771_040--Hb_026050_010 Hb_009771_040--Hb_002250_140 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.01769 2.10514 11.4043 0 0.0405876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102496 0.0806433 0.114318 0.240906 7.30218

CAGE analysis